HsaINT0105955 @ hg19
Intron Retention
Gene
ENSG00000122085 | MTERFD2
Description
MTERF domain containing 2 [Source:HGNC Symbol;Acc:28785]
Coordinates
chr2:242033692-242036842:-
Coord C1 exon
chr2:242036658-242036842
Coord A exon
chr2:242033848-242036657
Coord C2 exon
chr2:242033692-242033847
Length
2810 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GGTGCTTTTGTTTTCTCCAGCAG
3' ss Score
7.45
Exon sequences
Seq C1 exon
GGAAATTAAAGAGGGTGCTTTACTGTTGCCCTGAAATTTTCACCATGCGCCAGCAGGACATTAACGACACTGTCAGGCTTCTCAAGGAGAAGTGCCTTTTCACGGTACAGCAAGTCACCAAGATTTTGCACAGTTGCCCCTCTGTTCTTCGAGAGGACCTGGGTCAACTGGAATACAAGTTTCAG
Seq A exon
GTGAGAATGACTGATAGCGTGATTAGCGTAGTTTCAGGTGAGAATGACTGGTAATGGGATTAGCGTAGTTTCAGGTGAGAATGACTGGTACCGTGATTAGTGTAGTAACAGCAAGTTTCTCAGGTTTTTCAAATGTAGTGAAGGTCAGTTATATGGATAAGAAGCCTCGGACACCTCATATTTGAGTGGAGGAAGTGAAAGACTAGATTCTCTGCATACATCAGCCAAAGAGAAATCTTTAATTTCTTTACTACAGATCAAACCTATTCTTCAACTTTTCTGCCATTAATAATGAATGATCCAGTCCTATTCTTAGAGTCTAAGTGGGGACTCTGAAATAGCTAATTTTAAAATAGCTGAAACCTTCCTGTCCTTAGAATCTATTTTGCATGTTGATTTTGAAAATGTAATTTTAACAGTTGTCCGATTTTTTGGTAATAATTATGACAACTTAGGTCGAATTTCTAGATGTTTTCTGAATGTTTTGCCTATTCTTTCCATATTCATCCTTTTCCTTCCCCATTTAAAGAAAAATACCACCTCTTCCTTCTGCCCCTTCTCCCTCCTGCCCCTTTTCCCTCCCACCCCTTTATTTCCTGCTCCATGTTTCTCAGGATGAATTTGAAAGTGTTTTGAAACTGCTGGCTGTCACACAAATGTCAGTATCCTAGACTGGGTATTCGCTGTTGTCAATTAGGCAATTCTTTTTGAATCCTTTTGTACAACTTAAGTTTTTATGGTTTATAGAATGATAGGTTTCAATACTCTGTATCTGGGACTCCTAAGTGTGTTTGTGTCTTCCAGTATGCATACTTCAGGATGGGAATTAAGCATCCAGACATTGTAAAGAGTGAGTACTTGCAGTATTCACTAACCAAGATTAAGCAGAGACACATTTACCTGGAGCGCCTGGGACGGTACCAAACCCCTGATAAGAAGGGGCAGACACAGATCCCTAACCCATTGCTCAAGGACATTCTCAGAGTTTCAGAAGCTGAGTTTTTGGCCAGGACAGCCTGTACTTCTGTTGAGGAGTTTCAAGTTTTTAAGAAGCTCCTGGCTCGGGAGGAGGAGGAGTCTGAGAGCAGCACATCTGATGACAAAAGGGCAAGTCTGGATGAGGATGAGGATGACGATGATGAGGAGGACAATGATGAGGATGACAATGATGAGGATGACGATGATGAGGACGACGACGAGGCGGAGGACAATGATGAGGATGAGGACGACGACGAGGAGGAATAGCTGTGATGGAAGGACTAGAGCGAAAGGGCCCAGAGATATCAAGGAAGCTTTTCATTCTCTTAAAGCTTTTGGGTCCTTTACTTGAATCTTCTCAAGTTATTTTTTATTCTAAAACTGGTCTCTTGATGAAAAAAATTATAAGTCACCTGAGAGGCAGACAGATCAAACCAAACAGGAAACAGGAAATGCATGTTTGATCTGTTGTCACGTGTCTGTGGGGAGGGCCCTGTCCCATCCTGAATAAGATACTTATGTTGAGCTATTCACATCAAGGGGACTCAATATATCAACAATTGGTTTTATTTTTTTCTCTTTTGAATATGTTGGTGATAATTCCGTGACAGTTGGAAGATGGGGTTCATTCTTCCGGTTCAGGAATCACTATGTATTTCCTTCTTGTGATAAAAATAAAATTACGAGAAGGCAATGTGAGGTTTTAGTACATCATAGCACTTTATTTTATGAAAACATGTAGCAGATTTTCCACAAAAATGCTTATTTTTAATCCAAAAGTATATTGCTTCATAATGGTATTCAGTGCACAGCAGAGTAAAAGAAGTTAATTCATGATGTACTGGTTAATTTTGCATGGCTTCTTAAGGCCAGCAAAATGCTGGCAGTTTTCTTTATCTTTGTGAAGAACAGGCCCTTCCTGTTTGGGGAAGTTGGCTTTTATGTCAGCTCTTGGCCAGTGGTCACTTCCAAGCCTGGTGTCTCCGGCCCTGTAGTCTGTAGTGCCAGACTGTGCTGGCCTGGAGAGTGCTGGGGCAGGTGGAGGCCAGGGAATGGTCCCATACAGTTATCTCCCCTGCCCTGGTTACAGACAGCTTCGAGAACCAGAGGAGAAGAGCATAGGGTCATGGAGCAGGTGGGCTGAAGCCAGGGCCACAGGGAGCAATCCGTGACCCCCCAAGGTGGGTGTGGGGGGGGGGGGGGGCGTGTCACCTTAGGGAACTCAATGAGTCCGAAGAACAATTTGAAATGTTGGGAAAAGAGAAGAGGAATTTGATGTCAGCCGGGGTGATCCCTGAGATAGAGGCCTGTCTCTGATGGCATGAGCTCTAAGAGGGTCCTGGAGGATTGGTACATCCTAGAACATTCCAGTTAGCCCTCTTTTAGGGGAAACTGGCATAGGATTGATGCAGAAGGCATTTTTGATGATGGGACCAAAATTCAAGTCTCCTTGGTAGCATTCTAGGATCAACTAGATCCTAGGATCTGGTAGATTGTAGGATTCTAGTGGGTAGAGGCCAGGGGTGCTGTGAAACATCCTGCAGTGCACAGGATGGTCCCACAAGAGAGGATGATCCGGCCCAGAATGTCAGTGCTGAGCCTGAGAAACTCATCTAAGGCCTGGTCCACAACAGTAATGTGACTGTTCACTCGTGACAACTTCAGATGGTAAATGGACTTAGGATCGTATTATTTTATTTAAAAGAAAAATAAGGAGCTGGTTTTTCAGCCGGGTTCCTTTCCCCTATGCACTGGAATACCCCTGGTAGGTGTGAGCTGCATGCAATTGTGGGGATTCAGCACTGAAATCTAGGTGCTTTTGTTTTCTCCAG
Seq C2 exon
CAGCCTCGTCTTACAGCGTGACTGCAAAGAAAAAGACTTTTGTTTTGCAAAAGAAAAGCAGCTCGGTGACTCCGTCCACATCGCCACAGTTGAGTCAGATGGCAGTGGCAGTCCTTTGCCAGTGGAAGGAGTTCCTGCTAAGGGGAGGTGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122085-MTERFD2:NR_028050:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF025369=mTERF=PU(40.0=97.9)
A:
NA
C2:
PF025369=mTERF=PD(20.7=43.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)