DreINT0014767 @ danRer10
Intron Retention
Gene
ENSDARG00000079124 | MTERF4
Description
mitochondrial transcription termination factor 4 [Source:HGNC Symbol;Acc:HGNC:28785]
Coordinates
chr2:44701246-44704320:+
Coord C1 exon
chr2:44701246-44701430
Coord A exon
chr2:44701431-44703904
Coord C2 exon
chr2:44703905-44704320
Length
2474 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
AGCTTCTTTTCACCCCACAGTAT
3' ss Score
7.18
Exon sequences
Seq C1 exon
GTAGTTTACAGAGGATGATCAGTCACTACCCCAAAGTCATGGTCCTGCCATTAAAAAGGGTAAACGCAGTATCGCGATTGCTCAAAGAAAAATGCCACTTCACCACCCAACAAGTCACAGAAATCCTCCGAAACTCTCCTGAGGTTTTGGAGGAGGATTTAGCCCAGCTGGAGTACAAGATTCAG
Seq A exon
GTACAGCATGCTTTTTTCTCAGGGAGTGTTTTTTAGGTCTCATGAGAGCACATGATGCCAGAACATTTGAGGGGGAAAAACTGTTTTTGTAAATGTATTTCTCCCACCGTTTTGCTGTTGTATGAGCTGTCGCAGGTCTTCTGTGATAGTCAAATCACAGCATATGCCAGATCGCAATTATAGCTGACCAGACACCACAGTCCAGAACACATCATATTGTGTGGTCACTGCGAATAAAAAAAATTAATAAACAAATCGAAAGAAAATGTTATATGTAGTCGAGCAAAACGGTCATGTTCTCTATCGTGTTTAGTGTTGGTCAACTGTGGTAGCATCTTTTAATTAGGAAAAAATATTTTATTATTATTATAACTATTTTTTATTTTTGCTCTTTTATTGATAATTTTTCTATGTTCCTTCCTATTATGTGCTTATTGCTGTTTTTACTGTTTTATGCTCATATCGTGTGTTTATTTTCTCTCTGTAAAGCACTTTGTGCAGACCTGTGGTAGTTGGAAATGTGCTATATAAATAAATAGAACTTGAACTTGAACTTATATAGTACGCTAATAACAGTATGTGAGGCGAGTAGTATGTCCAAATTCATAGAATTCTAAAAACAGCATGCGAGAAGTACCCGGATGACCTACTACTTCGAGATTCTGCACCCTGAGAGAATTCATGAATGGTAGTGAAGCTACTATTCATACTAATCACATTCATACTGTATAGAACGCACTTTTTTAACGATCAAGTAGTAAATTCAACTGAAATCGTCTACTGAGTAGTAGACGATTTCAGATGCAGCCTTTGTGCAGTGTTTGTTTTTTTTCCTCCCTTTTTTTTCCCCAACTACCAGAATGGTGTGCATGCTTTTGTGTGCATGTTTTGTCATTGCAATTTTGAAATGTTCAAGCGAGATTAAAGCATTTGGCCACAAGAAATTATAACGTTTGTAGCTTTAAAAAGGAATAAATGTATTTAATTATTCATATGTTGAATTAATTATATGATTTTTATTAATTTTTTTTACATTTCATCATTTAATTTTTGTACAATTACAAAATACAATTTGTAAACTCAATTTGTGAATGCACAAGTAAAAATCACAAATATTTTCGACAAATGAATTGAATTTGTGTGTTTCAGAATCATGTTTTGAAGTTACAAATTGGATTTGTGTACTTATGAATTGTGTTTTGAATTTATGAATTGGATTTGCGTACATTTTTAATTGTTTTTTTTTATTCACAAATTGGTTTTGTGTATTTTTGAATAGTTTTGAATTCATGAATTGAAATGGTTTATAACATTTGCTCTTTTGTATTTAACTATGCTTCTAATTTATGGAGCCAGATCAGTCTCAAAAATAATACATTTACAAAATATTCATACATGGATAGCACAGTTCACATCTACAAAATACAATTTGTAAACACAATTTGTGAATGCACAAGTAAAAATCACAAATATTTTCGACAAATGAATTGAATTTGTGTATTTCAGAAACATGTTTTGAATTTACAAATTGGATTTGTATACCTATGAATTGTGTTTTGAATTTATGAATTGGATTTGCGAACATTTTTAATTGTTTTTTTTTTATTTACAAATTGGTTTTGTGTATTTTTGAATAGTTTTGAATTCATGAATTGAATTTGTGTATTTTTGAATCGTGTTTTGAATTTACAAATTGGATTTGTGTATTTTTTTATCGTGTTTTGAATTCATGAATTTGATTTGCATCAAATTCATGAATCATGTTTTGAACTGGGCGAGGCAGTGGTGCAGTAGGTAGTGCTGTCGCCTCACAGCAAGAAGGTTGCTTGTTCGAGCCTCGCCTCAGTTAGCGTTTCTGTGTGGAGTTTGCATGATCTCACTGCCTTCGCGTGGGTTTTCTCCGGGTGCTCCGGTTTCCCCCACAGTCCAAAGACATGTGGTACAGGTGAATTGGGTAGGCTAAAGTGTCCGTAGTGTATAAGTGTGAATGTGTGTGTGGATGTTTCCCAGAGATGGGTTGCGGCTGGAAGGGCATCCGCTGCGTAAAAACTTGCTGGATAAGTTGGCGGTTCATTCCGCTGTGGCGGCCCCAGATTAATAAAGGGACTAAGCCGACAAGAAAATGAATGAATAAATGTTTTGAACTTACAAATTATATTTTGTAAATGTTAATTGTGTTGTTGATGGATGAGTTTTAATTTGTAAATGTATTATTTTTGAAACTGATCTGGCTCCATAGTAATTCTCATGATATTTTATGTAAATGTGTTCACCTACAAAAATTTCCCCCAGTCAGTTTAATACAATGAATTATTTAAAAATGTTTAAGTTATTTAAATCATGTGGTGAAGTTGCATTCGAATCACAATCACAGTATAAATAACATAAATGTTGCGATGTACATTTTTTTCCCAGTGTAATGCAGCCCGATTTTATACTAGCAAACTGACGGCCAGCTTCTTTTCACCCCACAG
Seq C2 exon
TATACATATTTCCGTATGGGCGTTCGGCAAGCAGAAATGGTAAAGTCGAAGCTGTTCAGATTACCTGTGTCTGAGCTGCGGTGTCGACACAGTTTTCTGGAGAGAAGAGGACTGTACCAGACGCCAGACAAAAAGGGTCAAACCCTCATCCTCAACCCTCCGCTCAAAGACATCCTCTGCGCCTCTGAGGAAACATTTCTGATGCAGGTCGCCTCCGCAAATGCAGAAGAGTTCAATGCTTTTCGCAAGCTGATAGCAAGAGAGCTGGAGGAAGAAGACAAAGATGAATACAGCAGCAGTGATGAGGATGATGATGAAGATGATGATGATGAACAGCACAGAAGGAAGCCTCACTAGAAAATATATTATAAGCCGGGCATGAAATGAGGCAATAAAGGGATATTTCATACAAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079124:ENSDART00000155362:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.237
Domain overlap (PFAM):
C1:
PF025369=mTERF=FE(28.6=100)
A:
NA
C2:
PF025369=mTERF=PD(31.5=56.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]