HsaINT1023670 @ hg38
Intron Retention
Gene
ENSG00000122085 | MTERF4
Description
mitochondrial transcription termination factor 4 [Source:HGNC Symbol;Acc:HGNC:28785]
Coordinates
chr2:241095566-241097427:-
Coord C1 exon
chr2:241097243-241097427
Coord A exon
chr2:241096439-241097242
Coord C2 exon
chr2:241095566-241096438
Length
804 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
AGTGTGTTTGTGTCTTCCAGTAT
3' ss Score
7.91
Exon sequences
Seq C1 exon
GGAAATTAAAGAGGGTGCTTTACTGTTGCCCTGAAATTTTCACCATGCGCCAGCAGGACATTAACGACACTGTCAGGCTTCTCAAGGAGAAGTGCCTTTTCACGGTACAGCAAGTCACCAAGATTTTGCACAGTTGCCCCTCTGTTCTTCGAGAGGACCTGGGTCAACTGGAATACAAGTTTCAG
Seq A exon
GTGAGAATGACTGATAGCGTGATTAGCGTAGTTTCAGGTGAGAATGACTGGTAATGGGATTAGCGTAGTTTCAGGTGAGAATGACTGGTACCGTGATTAGTGTAGTAACAGCAAGTTTCTCAGGTTTTTCAAATGTAGTGAAGGTCAGTTATATGGATAAGAAGCCTCGGACACCTCATATTTGAGTGGAGGAAGTGAAAGACTAGATTCTCTGCATACATCAGCCAAAGAGAAATCTTTAATTTCTTTACTACAGATCAAACCTATTCTTCAACTTTTCTGCCATTAATAATGAATGATCCAGTCCTATTCTTAGAGTCTAAGTGGGGACTCTGAAATAGCTAATTTTAAAATAGCTGAAACCTTCCTGTCCTTAGAATCTATTTTGCATGTTGATTTTGAAAATGTAATTTTAACAGTTGTCCGATTTTTTGGTAATAATTATGACAACTTAGGTCGAATTTCTAGATGTTTTCTGAATGTTTTGCCTATTCTTTCCATATTCATCCTTTTCCTTCCCCATTTAAAGAAAAATACCACCTCTTCCTTCTGCCCCTTCTCCCTCCTGCCCCTTTTCCCTCCCACCCCTTTATTTCCTGCTCCATGTTTCTCAGGATGAATTTGAAAGTGTTTTGAAACTGCTGGCTGTCACACAAATGTCAGTATCCTAGACTGGGTATTCGCTGTTGTCAATTAGGCAATTCTTTTTGAATCCTTTTGTACAACTTAAGTTTTTATGGTTTATAGAATGATAGGTTTCAATACTCTGTATCTGGGACTCCTAAGTGTGTTTGTGTCTTCCAG
Seq C2 exon
TATGCATACTTCAGGATGGGAATTAAGCATCCAGACATTGTAAAGAGTGAGTACTTGCAGTATTCACTAACCAAGATTAAGCAGAGACACATTTACCTGGAGCGCCTGGGACGGTACCAAACCCCTGATAAGAAGGGGCAGACACAGATCCCTAACCCATTGCTCAAGGACATTCTCAGAGTTTCAGAAGCTGAGTTTTTGGCCAGGACAGCCTGTACTTCTGTTGAGGAGTTTCAAGTTTTTAAGAAGCTCCTGGCTCGGGAGGAGGAGGAGTCTGAGAGCAGCACATCTGATGACAAAAGGGCAAGTCTGGATGAGGATGAGGATGACGATGATGAGGAGGACAATGATGAGGATGACAATGATGAGGATGACGATGATGAGGACGACGACGAGGCGGAGGACAATGATGAGGATGAGGACGACGACGAGGAGGAATAGCTGTGATGGAAGGACTAGAGCGAAAGGGCCCAGAGATATCAAGGAAGCTTTTCATTCTCTTAAAGCTTTTGGGTCCTTTACTTGAATCTTCTCAAGTTATTTTTTATTCTAAAACTGGTCTCTTGATGAAAAAAATTATAAGTCACCTGAGAGGCAGACAGATCAAACCAAACAGGAAACAGGAAATGCATGTTTGATCTGTTGTCACGTGTCTGTGGGGAGGGCCCTGTCCCATCCTGAATAAGATACTTATGTTGAGCTATTCACATCAAGGGGACTCAATATATCAACAATTGGTTTTATTTTTTTCTCTTTTGAATATGTTGGTGATAATTCCGTGACAGTTGGAAGATGGGGTTCATTCTTCCGGTTCAGGAATCACTATGTATTTCCTTCTTGTGATAAAAATAAAATTACGAGAAGGCAATGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122085:ENST00000391980:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.452
Domain overlap (PFAM):
C1:
PF025369=mTERF=PU(40.0=97.9)
A:
NA
C2:
PF025369=mTERF=PD(28.5=45.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGCAGGACATTAACGACA
R:
GTCCTGGCCAAAAACTCAGCT
Band lengths:
346-1150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains