BtaINT0095820 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000784 | MTERFD2
Description
Bos taurus MTERF domain containing 2 (MTERFD2), mRNA. [Source:RefSeq mRNA;Acc:NM_001244226]
Coordinates
chr3:120809687-120811419:-
Coord C1 exon
chr3:120811235-120811419
Coord A exon
chr3:120810576-120811234
Coord C2 exon
chr3:120809687-120810575
Length
659 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
AACCACGTCTGTGTCTCCAGTAT
3' ss Score
5.23
Exon sequences
Seq C1 exon
GGAAATTAAAGAGGGTGCTTTACTGTTGCCCTGAAATTTTCACCATGCGTCAGCGGGACATTGAAGTCATTGTTGGGGTCCTTAAGGAGAAGTGCCTTTTCACCGTGAAGCAAGTCACCGAGATTTTGCACAGGTGCCCGTATGTTCTTCGGGAGGACCCTGGTGAGCTGGAGTACAAATTTCAG
Seq A exon
GTAAGAATGGCTGGTGGCGTGCTGGGTAGCAGCAGGTTTCCAGTGCAGTCAGGGTCAGCTGACTCACCTGGGCAAGCAGACAAGGTCAAGATTAAACCCTCTTGGCCCAGCGCCAGCCAGAATTCAGTGTGGAGTCTTCTTCGCCACGGGTAAAAGATCTTCCGCAACTTTCCTGCCATTGATAACGGAATACTCAGGCCCCTTCTTAGAGTTCATATGAGACCTCTGCTTGAAATACCTAATTTAAAATTAGCTAGAACCTTTCTTTCAAATCTGTTGTGCATGTTGATCTTAGAAACGTAAGTATGAAGGTTGTTCCAAAGTTTCTGGTAACAACTTTGATGGCTTAGGTCAGATCCTAGATGTTTTCTGAATTATTTACCTATTTTTTTCATGGTCCCAGTTTTTCTTACCCCATGAAGGAAAATAGATCTTGATTTCTCCTTCCTGCCCTTTATTTTTTGCTGCATCTTTCTCGATATAAATTTGAAAATGCTTTGAAAGCTGTCGCCATCGTGCAGATGCTGGGGGTCACAGTGCTCTACCGCTGTTGACTAGTCAGGTTTCTCCGCGTGCTTTTGGACAGCTGCAGTTGGCTGTGCTTTAGGAACCTACCAGGCTTTTTGCAGCTGCCTTCCTAACCACGTCTGTGTCTCCAG
Seq C2 exon
TATGCCTATTTCAGGATGGGGATTAAACACGTGGACATTGTGAAGACGGACCTGCTGCAGTACTCCATGACCAAGACCAAACAGAGACACGTGTTCCTGGAGCGGCTGGGCCGGTACCAGACCCCTGACAAGAAGGGGCAGACACAGGTCCCCAACCCTTTACTGAAGGACATCCTCCGAGTTTCAGAAGCTGAGTTTCTGGCCAGAACAGCAGTTTCTTCTGCTGAGGAGTTTGAGGTTTTTAAGAAACTCTTGGCCCGGGAGGAAGAGGAGCCTGAGGGCTGCATGGCTGATGACGAGAGTCTGGATGAGGAGGAGGAGGAGGACAGGGAGGAGGAGTAGGAGCTGTGACGCATGGACTGCAGTGAAGGGAGCCCAGAGAGAGGAAAGGTTATTTTAATTTCCTCAAAGCTTTTGGAAACTTCACTTCATTCTTCTCAGGTTATTTTTTATTCTTAAACTGACCTTTTGATGAAAGAATGTTTGGAAATCACCTGAGAGGTAGACAGGCCACACTAAGCAGCAGATGCCTTGGCTCGATCGGTTGGGTTTCGTGTGGAGGGCCCTGCTCCATCCTGACCCACAGGCTGGGAGCTCCTGAAGTCGGGGGCTCAGTGCAGCAGCGTCTGGTGTTGCTGTTTCTCCGTCATCTGTGTTGGTGATAATTCTGTGACACAGTGGGGATGTTTCTTCTGGTTCAGGAGTCATTTTACATCCTTCTAGTGACAAAGAATTAGGAGAAGACAGTGAAGCCTTAGTACATCACAACAGTTTATTTTAATGACAACAAGTAGCAGATTTTCCACAAAAATACTCATGTTTTTAAATAAAAAATACGTCTTTGTAATTGCGTTCAGTATACAGCAGAGTAAAAGAAAGCTGACTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000784:ENSBTAT00000001040:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.248
Domain overlap (PFAM):
C1:
PF025369=mTERF=FE(26.9=100)
A:
NA
C2:
PF025369=mTERF=PD(29.5=58.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCACCGTGAAGCAAGTCACC
R:
TCCCGGGCCAAGAGTTTCTTA
Band lengths:
350-1009
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]