MmuINT1023523 @ mm10
Intron Retention
Gene
ENSMUSG00000026273 | Mterf4
Description
mitochondrial transcription termination factor 4 [Source:MGI Symbol;Acc:MGI:1918355]
Coordinates
chr1:93301205-93302902:-
Coord C1 exon
chr1:93302718-93302902
Coord A exon
chr1:93301796-93302717
Coord C2 exon
chr1:93301205-93301795
Length
922 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
AACATGTTTGTATCTTTCAGTAT
3' ss Score
8.05
Exon sequences
Seq C1 exon
GGAAACTGAAGCGGGTGCTGTCCGTTTGCCCTGAGGTTTTCACCATGCATCAGCGGGACATTGACCGAGTTGTGAAGGTCCTCAGGGAGAAGTGCTTGTTCACGGCACAGCACATCACAGACGTTCTGCACAGATGCCCCACTGTTTTGCAGGAGGACCCCAACGAGCTAGAATACAAATTCCAG
Seq A exon
GTGAGAGTAAGTGACTAGGCCGATGATGGCAGAGTGTTCAGGTTTTTAAAGCTGAATAGGGTCTGAAGCCTCTGAGTAAAACACCTCAGTTTTCTCCTCTCCAAAGCAAACCTGTTGTTTAGCTCTGCCCCATTCCAGGTCCAAGTAGGTAAACTTTACAACCCTTGGGGCATCTTTTTGTATAGGAGATTTAGAAATTGTGACAGTTGCCCTAAAAGTTTAGTGACAGATAGGTCATAAGCACTTGTGCATAGCTGTGATGGCAGTGCGGGCACTCCTTTAATCTTAGCACTCCAGAGGCAGAGGCAGGCGGATCTCTGAGTTTGAGGCCAGCATGGTCTACACAGTGAGTTCCAGGACAGCAAAGGCTATGTAGAGACCATGTCTCTAAAAACCAACCAAACAAGCAAACAAAGCTGGTATGAGGACCTGAGTCCAGATCCCCAGAACCCACCTAAGCTGGATGCCCAGTGCCCCAGCACCCCTGTGGGGAGATGGGAGGTAGAGTCAGGGCGTCCTTGGAGGCTTGTGGGCCAGCTAGCCTGGCCTCTGAGCTCTGAAGCACTGCTGGGACATACTCAGATAAAACAAGCTGCATGCTCACACATGTGTTTAAAGGTTCCTAGGTATCTTAGGATTTCTTTGGGTCTGATTTTTCCTACACTCATGATTTTTGTTGCCCTATTTAAAGAAAAGTATATCCCTGTATGCCCCTTTGTTTTCTGATGCATTTTTCTCAGCTTGAATTTGGAAATGCTTTGAAAACTTGAGATTTCATAAAAGTGTTGGTATTATACTACAGTGGCTATTCTACCATTTCTAATTAGGCAACTAATGACTTTGGACTAAAGTTTGTTTTGAGTTGGAATGACAGGCTTCAGGTTTCTCTACATGGATTCCTGAACATGTTTGTATCTTTCAG
Seq C2 exon
TATGCATATTTCAGGATGGGACTCACACATCTAGACATAGTCAGGACGAATTTCTTACAGTATTCAATAACCAAGATCAAGCAGAGACACATTTACCTGGAGCGCCTTGGACGGTACCAGACCCCTGATAAGAAGGGGCAGACACAGATCCCTAATCCCTCACTGAGGAACATTCTCAGAGTTTCTGAAGCTGAGTTTTTGGCCAGGACAGCCTGTTCCTCTGTCGAGGAGTTTCAAGTTTTTAAAAAACTCTTGGATCAAGAGGAGGAGGAGGAGTCTGAGAGCCATGCATCTGAGGAGGAAGAGGAAGAGGAGGAAGAGGAGGAGCTACTGTGACACAGCACTGGGGTGTCAGAGGTCATTCTCATATTCTCGAAGTGCTGGGGACCTTCACCTGGATCTTCTCAAGCACTTTTGATCCCAACACTGGTATTTTGATGGGGGAAAAAACCAACCTGTAATGATCCACTGGAGATACAGGTAGATAAACCAAACCAAATGAGGGGTGCTTTGTTGTGGGTTCTTTGGGAGGCCCTACTCCATCCTAAATAAAGGACTCGGCTGTCAAAATCCAGGGGGTGCAACCCTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026273:ENSMUST00000027492:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.297
Domain overlap (PFAM):
C1:
PF025369=mTERF=FE(26.0=100)
A:
NA
C2:
PF025369=mTERF=PD(28.5=59.8)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCATCAGCGGGACATTGA
R:
GTCCTGGCCAAAAACTCAGCT
Band lengths:
351-1273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types