HsaINT0105969 @ hg19
Intron Retention
Gene
ENSG00000143033 | MTF2
Description
metal response element binding transcription factor 2 [Source:HGNC Symbol;Acc:29535]
Coordinates
chr1:93575787-93575985:+
Coord C1 exon
chr1:93575787-93575803
Coord A exon
chr1:93575804-93575883
Coord C2 exon
chr1:93575884-93575985
Length
80 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
TGACCAAGCTGTCTTTACAGGAT
3' ss Score
6.87
Exon sequences
Seq C1 exon
AGACTCTACAGGGGCAG
Seq A exon
GTAATTCACTGGTCCACAAGCGGTCTCCTTTACGTCGAAACCAAAAGACCCCAACATCCTTGACCAAGCTGTCTTTACAG
Seq C2 exon
GATGGACATAAAGCCAAAAAGCCAGCATGTAAATTTGAAGAGGGTCAGGATGTCCTAGCTAGATGGTCAGATGGCTTGTTTTATCTTGGCACTATCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143033-MTF2:NM_001164391:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.343 A=NA C2=0.343
Domain overlap (PFAM):
C1:
PF150571=DUF4537=PU(31.1=28.4)
A:
NA
C2:
PF150571=DUF4537=PU(31.1=28.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)