HsaINT0107496 @ hg38
Intron Retention
Gene
ENSG00000133026 | MYH10
Description
myosin heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:7568]
Coordinates
chr17:8548644-8552144:-
Coord C1 exon
chr17:8552046-8552144
Coord A exon
chr17:8548788-8552045
Coord C2 exon
chr17:8548644-8548787
Length
3258 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
3' ss Seq
TCCATTATATTTCCTTTTAGCTG
3' ss Score
8.69
Exon sequences
Seq C1 exon
ACCTTCTGGAAAAGTCTCGTGCTGTTCGTCAAGCAAAAGATGAACGTACTTTTCATATCTTTTACCAGTTGTTATCTGGAGCAGGAGAACACCTAAAGT
Seq A exon
GTAAGTTACAAAGGTTTTTACTATTTTATATTCACTGGAATATCTCTTTTAATTTTTTTTTGAGAAAAAACAATTTTGGGAAACAGTTTTTTACACACAAAACACCAAATTTCCAGCTGGTTAAATCATGAAAATCAAAATGAAATTGAACTTCCATGCCATGGGGTAAGTACTTTATTTTAAGCGGCAGGTATTGTAGATAATATAATCTTTTGTACTTTTATTTCTTTTTTAAAATTTTTTAAATTAGAAGACAAATGATGCGTATTTTACAACTCTGTTTCAACGTTTTAAAATATGAAAGTAAGGGAAAAGAAATTTACCTAATGAAATTAAGTAGAATAAATATTTTTATTTCTAGATTTACAACTGAATATATGTTATTGCTTCCACTAGTACTAGAAAGAGCCTGTGGTGGATATTGATTGATTGAATGTCAGGGATCACAAGGACTAGAAGTTTAGAGTTGGGCAGGTACAAAGGAGAGCTCAGGTCTGGGTCAGAATTTTGCTGGGTTAGAAATATATTGAGGGAGAGGAGAAGATGTATAACTTTCCCATCTCTTCTGATTCTCAAATTTAGTGTTTCTGCATGATTATTATATATATTATCTAGATATCAAAGTAGACACATATACAGTAAAAGTTTTCTCATCTGGCATCCAGGCTTTTGCTAACCACAGACATCTGTGAAACCTTTGAACCCAAAAATTAATCAGAGAATGACCTGCAAGGGAAAAATCAAGCAACAAAAAAATAGAGTTATTGCCAAGGAGAGACTAAAAATTCAAGATGATGCAGTATGTAACACTGAAGAGAAGAAAATGCTCAGGCTTTCAGACTGGCAATAACTGCAATAGGAGTAAATTCTTTTTTTTTTTTTTTAAATTTATTATTTATTTATTTTTTATTGATAATTCTTGGGTGTTTCTCACAGAGGGGGACTTGGCAGGGTCATAGGACAATAGTGGAGGGAAGGTCAGCAGATAAACAAGTGAACAAAGGTCTCCGGTTTTCCTAGGCAGAGGACCCTGCGGCCTTCCGCAGTGTTTGTGTCCCTGGGTACTTGAGATTAGGGAGTGGTGATGACTCTTAAGGAGCATGCTGCCTTCAAGCATCTGTTTAACAAAGCACATCTTGCACCGCCCTTAATCCATTTAACCCTGAGTGGACACAGTACATGTTTCAGAGAGCACAGGGTTGGGGGTAAGGTCTCAGATCAACAGGATCCCAAGGCAGAAGAAGTTTTCTTAGTACAGAACAAAATGAAAAGTCTCCCATGTCTACTTCTTTCTACACAGACACGGCAACCATCCGATTTCTCAATCCCTTCCCCACCCCTCCCGCCTCTCCATTCCACAAAGCCGCCACTGTCATCCTGGCCCGCTCTCAATGAGCTGCTGGGCACACCTCCCAGACGGGGTGGTGGCCGGGCAGAGGGGCTCCTCACTTCCCAGTAGGGGCGGCCAGGCAGAGGCGCCCCTCACCTCCCGGGCAGGGCGGCTGGCCGGGCGGGGGGCTGTCCCCCCCACCTCCCTCCCGGACGGGGTGGCTGCCGGGCGGAGAGGCTCCTCACTTCTCAGACGGGGCGGCTGCCGGGCGGAGGGGCTCCTCACTTCTCAGACGGGGCGGCCGGGCAGAGATGCTCCTCACCTCCCAGACGGGGTCGGGGCCGGGCAGAGGTGCTCCTCACATCCCAGACGGGGCGGCGGGGCAGAGGCGCTCCCCACATCTCAGAAGATGGGCGGCCGGGCAGAGACGCTCCTCACTTCCTAGATGTGATGGCGGCCGGGAAGAGGTGTTCCTCACTTCCTAGGTGGGATGGCAGCCGGGTGGAGACGCTCCTCACTTTCCAGACTGGGCAGCCAGGCAGAGGGGCTCCTCACATCCCAGATGATGGGCGGCCAGGCAGAGACGCTCCTCACTTCCCAGACGGGGTGGCGGCCGGGCAGAGGCTGCAATCTCGGCACTTTGGGAGGCCAAGGCAGGCGGCTGGGAGGTGGAGGTTGTAGCGAGCCGAGATCACGCCACTGCACTCCAGCCTGGGCACCATTGAGCACTGAGTGAACGAGACTCCGTCTGCAATCCCGGCACCTCGGGAGGCCGAGGCTGGCGGATCACTTGCGGTTAGGGGCTGGAGACCGGCCTGGCCAACACAGCGAAACCCCGTCTCCACCAAAACCAGTCAGGCGTGGCGGCGCGAGCTTTCAATCGCAGGCACTGGGCAGGCTGAGTCAGGAGAATCAGGCAGGGAGGCTGCAGCGAGCCGAGATGGCAGCAGCACAGTCCAGCCTCGGCTCAGCATGAGAGGGAGACCGTGGAAAGAGAGGGAGAGGGAGAGGGAGAGCGAGTAAATTCTTTAAAATGATCAAAGTGTTGAAAGAAATAGAAAAAGAAAGCAGCAGGCAGTACCCTGTAGAAGTTAAATGTGATGTAGACAAGAATAACGGGACAGGGTGACCTGCAGAAATTCTCTGCAGGAGAGCAAGAGAGCCAGTCACAAAGAAAGCTGGGAGCATATTTGCATATCTGTTATAACGATAAATAGCCCTGCTATTTTGAGCACTCCTGAGAAATATTCTTTGGCTCTCAAGAATGCATTTGTCAAAAGAGTAAGTTCTCTTTAATTCATGTCTCCTACGGTACAGTAGTCAGTGCGGGTACCTGTTACAATAGTCTGCTGCGCCACATCACATCATCATTCTAAAGGCAACTTAACCACCAAGCAAGCTGGCTTGGAGAAAGTGTTTCAGGGCCTTTGCTGGGCTCGGGACGTGCTTGGTCCACATCACTGTATCTTTAGCTTATGTCCATGGTAGTTTTCATATTCACTTCATAGTGTTTGCTGCAAACTACTTGCTAAGATAGGAATATAGAATATGAGTTTAAAAGCTTTCCTTCAAAAAAGAGGGCTAAAATATTTAAATCTGAAAACAATAGAGTTTTGTCATCTGGACAATTGACATCATTTCGCAGATAACCAATTTCAAACAGAATATTGTACAAACTGCCATCCCCAAAACTCCTGTTAAGGTTTTTGCGTTGTTAACATCATCATTTTCCTTTGTTGGTACAGATAATTAAAAAAATGTATGTTTGTGTATTTACATGAATATATAAAGAAAAAAAACATTTTGCTGGCAATGGGTTGCATGGTGACCACTGCTCTCCTGTGACACTGGCACAGTTTGAATGCAGTTATGGCTTAGTTGTCTTCATGAGTATTTATCAAATTTTCTTCCATTATATTTCCTTTTAG
Seq C2 exon
CTGATTTGCTTCTTGAAGGATTTAATAACTACAGGTTTCTCTCCAATGGCTATATTCCTATTCCGGGACAGCAAGACAAAGATAATTTCCAGGAGACCATGGAAGCAATGCACATAATGGGCTTCTCCCATGAAGAGATTCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133026:ENST00000269243:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(12.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development