BtaINT0097116 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021151 | MYH10
Description
Bos taurus myosin, heavy chain 10, non-muscle (MYH10), mRNA. [Source:RefSeq mRNA;Acc:NM_174834]
Coordinates
chr19:28732003-28733862:-
Coord C1 exon
chr19:28733764-28733862
Coord A exon
chr19:28732147-28733763
Coord C2 exon
chr19:28732003-28732146
Length
1617 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
3' ss Seq
TGTATTCTGTTTTCTTTCAGCTG
3' ss Score
11.04
Exon sequences
Seq C1 exon
ACCTTCTGGAAAAATCTCGTGCTGTTCGTCAAGCAAAAGATGAGCGTACTTTTCATATCTTTTACCAATTGTTATCTGGAGCAGGAGAACATCTGAAGT
Seq A exon
GTAAGTTACAGATTTTTTTTTTTTTTACTGTTTTATGTTCAGTTGAATATCTTTTATAATACTTTTTTTTGACAAAGAGAACAGTTGTAGAATTATGCACATACACACACCAAAATTCTAGCTGGCTCAATTATGAAAGTGAAATTGAACTTCAAGCCATGGGATAGGTACTTTAAGTGGCAGGCGTGGTGGTATATTATCTTTTGTACTTTTCTTTTAAAATAATTTTAAATTTGAAGGCATATGATGTGTTTTATACAAATATTGTTTCAAAATTTGTAAATATAAAAGTAATAAATAAATTTATTTAATAAAGTTAAATTGAATACATGTGTGTATTCCTAGATTTACAACTGAATGTATGTTATGCTTCCAGTAGTACTAGAAAGAGCCTGTGTGGATTTTTATTTATTTTGTGAATCACAAAGACCAGAAATTTAGAGTTGGACAAGGTAAAAAGTAAGTTCTTTCCTGGGTCAGAATTTTGCTGGGTCAGAAGAAGATGCACAACTTCTTGGTTTCTTCTGAGTCTCAGAGTAAATGCTGCTTCTCTAGAATTAGTATGTATGTTATTTAGATATCACAATAGACATATAAAACCCTATGATCCTTTTCTCACTTGAGATCTAGGCTTTTACTAACCATGGATCATCTGTGGAAGCGTTAAACCCAGAAATTAGTTAAAAACCTGCAAGGAAAAAAAAAAAAGCAATAAATAGAGTAATTGCCATTGAGAGACTAAAATTTCAAGGTTATGCAGTAGGTAATGCTAAAGGGAAGAAAACCCTCATTTTCAGCCTGGCAGACTGAAAGCAGTAATGAATCAAGAAAATAACTGTTAAAAGAAGGAATTTTCTTTTTTTTTTTTTTTTAAGCAATACCCAGTGGAAGCTCCATGTGATGTAGATAAGAATTAAGGGATTGATGTGATCAGGAGTTCTCTGCAGGAGAGCCAGTGACATAGAAAGCCAGAAGCACAGATAACGTCTATTGTAGGAAAAACCATGTTTTACTATTTTGCACACTCTTCTTTTCTTAAGAACACATTTATTGAAAAGGAGCTTGTTCTTGCTTATTCATGTCCCCTGAAGTAAGAGAGTCAGTGGGCGTGTCTGTTATAATACCCTGTCAGACTAGTGCTATGTCAGACCTCGCTCTCAAAGGCAAATGGACCACTAAGCAGACTGACCTGGAGAAAGGGTTCCAGGGTGCTGACTGGGCTCAGGACTTGGCGGGCCCATGTTCCACACCAGGAACATAGAATACGGGTTTGAAGGCTTCTCCTCAAAAGATGTCAGAAGTATTTAAATCTGAAAACAATAAAGTTTAGTTATCTGGAAAATTGATATCATTTCCCAGCTATCTGATTTCAAATATAATATTGTATAAACCACTGTCCCCAAAGCCCCTGTTGAGATTTCTGTTGTTTACATCATCATTTCTTTCGTTGTACAGATCATGGAAGACTGTGTATTTAATGTAAGAATGTAAAGGAAGCAAAAGTCTGTGGTGGTGGTGGATTAGATGTTTTTCTGTCCTGTGGGTCCAGTTTGAAGATGGGGCTGTGCTTCAGTCTGTTGATGACTATTTATGACATTGTATTCTGTTTTCTTTCAG
Seq C2 exon
CTGATTTGCTCCTTGAAGGATTTAATAACTACAGATTTCTCTCCAATGGCTATATTCCTATTCCGGGACAACAAGACAAAGATAACTTCCAGGAGACAATGGAGGCAATGCATATAATGGGCTTCTCCCATGAAGAGATTCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021151:ENSBTAT00000028188:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTCTGGAAAAATCTCGTGCT
R:
CAGAATCTCTTCATGGGAGAAGCC
Band lengths:
242-1859
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development