MmuINT0103251 @ mm9
Intron Retention
Gene
ENSMUSG00000020900 | Myh10
Description
myosin, heavy polypeptide 10, non-muscle [Source:MGI Symbol;Acc:MGI:1930780]
Coordinates
chr11:68574155-68576156:+
Coord C1 exon
chr11:68574155-68574253
Coord A exon
chr11:68574254-68576012
Coord C2 exon
chr11:68576013-68576156
Length
1759 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
GTCGTTGTCTTTCCTTTTAGCCG
3' ss Score
8.9
Exon sequences
Seq C1 exon
ACCTTCTGGAAAAGTCTCGTGCTGTTCGTCAAGCTAAAGATGAGCGTACATTTCATATCTTTTATCAGTTGCTCTCTGGAGCAGGGGAACACCTGAAAT
Seq A exon
GTAAGTACTGGGGTTCTTAGTCTTCCATATTCAGTTGTCTTTTGGATCATTGAACTTAAGAGGCAGGTGTGTGAGTTTTTAATTCCAGCAGTTGGAAGGCAAAGCCCAGCAGATCTTTGTGAGTTCAAGGCCAGCCTGGTCTATGGTCTACATAGAGAGTTCAGGACAGCTAGGGATACATAAGGAGACCTTGTCTTAAATTAAATGAAAAGCTATCTTTGTAAGATTCTGTCGTAACATTTATAATGGAATAAAAAAGAATAAATTAATAAAGTATAGACTAGAATAGAAGCTCTTATTCCCAGATTGACAACTAAGCAGAGACTGTATTTGCACAGTACTAGAATGAGCAGTAGCGGGTGATTATTAACCGAGGAGAATCACGAGGACTGGAAGCTTAGGACTGGGCAGAGTGGAAAGTAAAGTTCTTCAAATAAATATATTTAATTTGAAAAAAAGAAATTAAAGCCAAGCATGGTCTAACCTCAGCATTCAGGAAGCAGAGGCAGGTGATCCTCTGGAGCTTAAGGCCAGTCTGGTTTACATAGTGAGTTCCAGGCCAGCCAGGGGCTCCCCAGTGAGCAAAAATTTTGCTGACTCAGATATATTAAGGCACGAGATGACAATTTTTGTCTTGAGTCCTAAACTCAGTGTGTGTGCTTATATTTATATAGAGACATAAAATACGTAGCTTTACAACAGGAGCACAGTGCAGTCAGACGTTTCTTACCTAGAGCACTGAGTACATGGAACGAGAAATTACATAGGGAAACCTGCAAGCAGTGAATACTCAGCCACACACAGCATTGCTAAGGAGACCACTCAAAGACAGGTAATGAGTCTGCAATTAGAGCTAATCAGAAGATTTTGAAAGTGTTGAAAAAAGGTGTTGGGGGAAGCAAACCCTTCCCAGTAGAGGTGTGATGTGACATAGTTAAACTGGGGAGAGGAGTGATCCTTGGGGATCCTCTGCAGAAGAGCCAGAGAGCTGGTTACGAGGAGAGCAGAGGCTGGGGCATGATCAGGGAGCCCTGCTCTATCCTGTCCCAGTGGGAAACACCCTTGAGCATCACTGAGTGAACTCGCCAAAAAAGTTGTTGTTCTTACCACATGGCCCCAAGGTCTGAGTAGCTACTGGTGGTGTCACTTAGCTCCCTGTCATGATATGACATGTTTCCTATCTCTGAAAGCAAGATAACCGCTGAGAAAACCAGCTTGGGGGGGAGGGGGGGCTGGGTTGCCTCTGGTAGGGCATGTACGTGGTGTGCACAAGGTTCTTGGCTCAGTCCCTGCCGTCACGGCTGGCCTGCAGGAGGTATTTCAGGGCCATACAGGGCTCAGGTGTCCTGGCCTTCTGCATCCAGGTCTTAGGTTCATGGCAGTGTTGCTGTAGACCCCGAAAAAGATTTGCTGTAAACTACCTGCTAAGATAAAAATACAGAATGAGTTTCAAAACTTAATGATGGTGCAAATATATAAATCTGGAATTTTTGCTTGTTTCTCTGCCACCCTGTTTCAAATAGAAAATTGTACAAATTACTATGCCAAAACAAAACAAAAACCTGCAGAAGTGTGAATATCTTTTTTTTTTCATCATTTGGAACATACTGGAAAACACTGTATGTTTATGCATTACATGTGTTAGCAGGGAAACGTGCCAGTGATGGGCAGGCGGCAAGCCCCCTCTGAGTTGTCAGTGTGTATAGGCAGGTATTTCAGTCTGTTGTTGTTAAATTGATGTCGTTGTCTTTCCTTTTAG
Seq C2 exon
CCGACTTACTCCTGGAAGGTTTCAACAACTACAGATTCCTCTCCAATGGCTATATTCCTATTCCTGGACAGCAAGACAAGGATAACTTCCAGGAGACCATGGAAGCCATGCACATCATGGGCTTCTCTCACGAAGAGATCCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020900-Myh10:NM_175260:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTCTGGAAAAGTCTCGTGC
R:
CGTGAGAGAAGCCCATGATGT
Band lengths:
231-1990
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: