DreINT0099718 @ danRer10
Intron Retention
Gene
ENSDARG00000000103 | myh10
Description
myosin, heavy chain 10, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030616-162]
Coordinates
chr6:7445769-7446684:+
Coord C1 exon
chr6:7445769-7445867
Coord A exon
chr6:7445868-7446540
Coord C2 exon
chr6:7446541-7446684
Length
673 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
TCCTCTTGTTCTTTTGGCAGCTG
3' ss Score
8.98
Exon sequences
Seq C1 exon
ATCTTCTTGAAAAGTCCAGGGCCATTCGCCAAGCCAAAGATGAACGCACCTTCCACGTCTTCTACCAGCTGTTGGCCGGTGCTGGAGAACATCTGAGAT
Seq A exon
GTGAGTGATTCTTTTAACATGATGACTAGGGTATCTAGAAATGAACTTGCACTTAGATTAAAAAGTCTATATAAACATGTTTGTGTCCTTTAATAAATTTGGGATATTTTTAATAATAATAGTGATGATAAAAAGGAACAAACTTGCTATGAGGTCTGAGGTTGCTGTATGTTTTTGTTGAACCCATCTGTTCATATTGTTTTAAAGCTATACTGTTTAAATTTGTAAAGCCAAATGACATTAATGTGGAACATGTCACCAACTACAGCAATGTGAAATAAAAGTGCTCTTGAGCATAAATGCTGCTAACAATATAATCAAGTCTGCCTCCATGTGATCTCAGAATATATGATTTTATATTCTGCTTTTGTTTGTAATTTCATTACCAGTTGCAGTGCCTGATTGGATTGTAGTATATGAGTACATCGTTTCGTACCACCTTCTTATAGTCTGGTTTTCATGTACTACCTTGCTTCAAAAAATAGATTGTAATGTCTCCACGTAGTTATTTGGCTTGATTCATGTCTTGTAGTACTTTAAACTAAGACTTCTTTGAATATTTATGATAAAAATGAATTGTAGAAATGCCAGTGCTGATGGAAAAAAAAGGTAGCATGCGTTAACACTCCCTGTGATTGCAGTTGTGTGATTAATCCTCTTGTTCTTTTGGCAG
Seq C2 exon
CTGATCTACTCCTGGAGGGTTTCAATAGCTACCGCTTCCTCTCCAATGGTAACATTCCCATCCCTGGCCAACAGGACAAGGATAATTTCCAAGAGACCATGGAAGCCATGCATATTATGAGCTTCAATCATGAGGAAATCTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000103:ENSDART00000151114:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.102
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTTGAAAAGTCCAGGGCCA
R:
AGATTTCCTCATGATTGAAGCTCA
Band lengths:
238-911
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]