RnoINT0096340 @ rn6
Intron Retention
Gene
ENSRNOG00000002886 | Myh10
Description
myosin heavy chain 10 [Source:RGD Symbol;Acc:71000]
Coordinates
chr10:55350368-55352526:+
Coord C1 exon
chr10:55350368-55350466
Coord A exon
chr10:55350467-55352382
Coord C2 exon
chr10:55352383-55352526
Length
1916 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
3' ss Seq
ATGTCTGTCTTTCCTTTCAGCCG
3' ss Score
11.52
Exon sequences
Seq C1 exon
ACCTTCTGGAAAAGTCCCGTGCTGTTCGTCAAGCTAAAGATGAACGCACGTTTCATATCTTTTATCAGTTGCTCTCTGGAGCAGGGGAACACCTGAAGT
Seq A exon
GTAAGTATTGGGTTCTTAGTCCTCTATATTCAGTTGTCTTTTTGACCACTGAACTTAAGAGGTGAATGTATGAGTTTTAATATATTAGCTTTTGAGATTTTCTTTAAATAAAATCCGAGTTGGATGTGGTGGCATACACCTTTAGTTCCAGCAGGTGGGAGGCAGAGCCCAGCAGATCTCCATGTGTTCAAGGCCAGCCTGGTCCACATAGAGAGTTCAGGACAGCTAGGTATATAAGGAGACTGTCTTAAATTTTTAAGTTAAAAGCTATTTCTGTAAGATTCTGTCCTAACATTTACAATGGAAATGTAAAAAAATAAATAAACTTAGTTAATAAAGTATAGAATAGAAGCTCTTGTTCCTTGATTTAAAACTAAGCAGAAGGGGTTGGGGATTTAGCTCAGTGGTAGAGTGCTTAAGGCTCTGGGTTCGGTCCCCAGCTCCGGAAAAAAAAAAAAAAAAAAAGAAAGAAAAGAAAACTAAGCAGAGACTGTCCTTACACTAGTACTAGCATGAGCAAGTAGGGATGTTTGTTTATCAGTGTGAATCACAAGGACTGGACACTTAGGATTGGCCAGCATGTAAAGTTCTTCAGATAAACATTTAAATTAAAGAGGAAATTAAACTCAAGCATGGTCTAACCTCAGCATTCAGGAAGCAGAATCAGGTGGACCTCCAGAGGCCCTCTGGTTTTACCCTGTCTCTAGCTGAGCAAGAATTTTGCTGACTCAGATCTATTAAGGAGAGAGACGTACGATTTAGTCCTAAACTCGGTGTATGTGCACAATTACTGTATATGTTATGTAGGTTTACAACAGACGCACAGTGCAGTGAGACTTTTCTTACCTGGAGCACCGTGAGTTCACGCAACTAGAAATTAAGTAGGGAAACCTGTACGCAGTAAAAACTCAGCCACACACAGAACATAAAGAGACCACTCAAGGTGATGCAATTGAAGAGAATAAGACTGAGACTTTCATCTGCAGACAGGTAATGAGTCTGCAACTAGAATCAATCAGATTTCCAAAGTGTTGAATGAAGGTGTTGGGGGAAGCAAACCGTTCCTAATAGAGGTTCAATGTGACATAGTTAGAAACTGGGGGAAGAGTGATCGATGGGAATCCTCGACAGAAGAGCAGGAGAGCCATGGCTGTATGAGGAGAGCAGAGGTTGGGACATGATCACATATATATTTGGGGCATAAGGAGCCCTGTTCTTTCTATTCTGTCACTAGTGGGAAATGTCCTTGAACACTATTGAGTTACTCACCAAAAAAAGTCGTTCTTGTCACGTGGCCCCTGCGGTATGAGTAGCTCCCTGTCATATGACCTGTTTCCTAACTCTAAAAGCCAACTAATTTGGGGGTGGGGGGTCTGCCTCTGTGGTAAAGCATGTGCGTGGTGTGCACAAGGTTCTTGGCTCAATCCCCACCATCACAGCTGGCCTGCAGGAGGTATTTCAGGGCCATACAGGGCTCAGGTGCCCTGACCTTCTGCATCCAGATCTTATGTCCATGGTAGTGTCGCTGGAGACCCCAGAAAAGATTTGCTGTAGACTACCTGTTAAGATAAAAATGCGGAATAAGAGTTTCAAAACTTAATGATGGTGCAAATACATAAATCTGGAATTTTTACTTGTTTCTCAGGTACCCCATTTCAAATAGAAAATTGTACAAATCAGTATACCACAACAAAAACCTGCAGAAGTGTAAACATGTTTACAAGTGTTTTCCCTTCATTGAAACAAATGCTGGAAAACTGTGTATGTTTATATATTACAAGAATTAACAGGGAAACGTGCCAGTGATGGGCTATGGCATCCCAGTCTCCTGAGTTCTCAGTCCGAGTTCGCAGAGTCTGTAGGCAGATTCTTAAGTCTGTCGATGTTAAATAGCTGATGTCTGTCTTTCCTTTCAG
Seq C2 exon
CCGACTTACTCCTGGAAGGCTTTAATAACTACAGATTCCTCTCCAACGGCTACATCCCTATTCCTGGACAGCAAGACAAGGATAACTTTCAGGAGACCATGGAAGCCATGCACATAATGGGCTTCTCTCACGAAGAGATCCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002886:ENSRNOT00000065895:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAAAAGTCCCGTGCTGTT
R:
TCTTCGTGAGAGAAGCCCATT
Band lengths:
230-2146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]