HsaINT0107542 @ hg19
Intron Retention
Gene
ENSG00000006788 | MYH13
Description
myosin, heavy chain 13, skeletal muscle [Source:HGNC Symbol;Acc:7571]
Coordinates
chr17:10257997-10258310:-
Coord C1 exon
chr17:10258212-10258310
Coord A exon
chr17:10258101-10258211
Coord C2 exon
chr17:10257997-10258100
Length
111 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
3' ss Seq
GGGATATCTGTGTTTCACAGACC
3' ss Score
7.12
Exon sequences
Seq C1 exon
ATCTGTTAGAAAAATCCAGAGTGACGTTTCAATTATCCAGTGAGAGAAGCTATCATATTTTCTACCAAATTATGTCAAACAAGAAGCCAGAACTAATTG
Seq A exon
GTAAGCTCTTGGAATACCTTTCTTATGTTCCAAATCGGTGACGTTGGGAAAAAAAAAACAACCCAGAGTAAGTTATGCATAAGCCATTAAAGGGATATCTGTGTTTCACAG
Seq C2 exon
ACCTGCTTCTGATCTCCACCAACCCCTTCGACTTCCCCTTCGTGAGCCAAGGAGAGGTCACGGTAGCCAGTATCGATGACAGTGAAGAACTGCTGGCGACAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006788-MYH13:NM_003802:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTTAGAAAAATCCAGAGTGACGT
R:
ATCTGTCGCCAGCAGTTCTTC
Band lengths:
202-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)