MmuINT1023811 @ mm10
Intron Retention
Gene
ENSMUSG00000060180 | Myh13
Description
myosin, heavy polypeptide 13, skeletal muscle [Source:MGI Symbol;Acc:MGI:1339967]
Coordinates
chr11:67334703-67335002:+
Coord C1 exon
chr11:67334703-67334801
Coord A exon
chr11:67334802-67334898
Coord C2 exon
chr11:67334899-67335002
Length
97 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
3' ss Seq
AGGCTCTCTATCTTTTACAGACT
3' ss Score
7.62
Exon sequences
Seq C1 exon
ATCTCCTGGAAAAATCCAGAGTGACATTCCAGTTATCCAGTGAAAGAAGCTATCACATTTTTTATCAAATCATGTCAAATAAGAAGCCAGAACTAATTG
Seq A exon
GTAAGCTCAGAGGTGTTCTTAGCTTCTTGACCAGTAGTGAGAATGGTACCCAGACTTAACACTGCCTGAGGTGTTAAAGGCTCTCTATCTTTTACAG
Seq C2 exon
ACTTGCTTCTGATTTCAACCAACCCCTTCGACTTCCCTTTCGTGAGCCAAGGAGAGGTCACAGTAGCTAGCATCGATGACAGCGAGGAATTGTTGGCCACTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060180:ENSMUST00000108684:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGTGACATTCCAGTTATCCA
R:
TCCTCGCTGTCATCGATGCTA
Band lengths:
172-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types