BtaINT0097177 @ bosTau6
Intron Retention
Gene
ENSBTAG00000025337 | MYH13
Description
myosin, heavy chain 13, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:7571]
Coordinates
chr19:29995760-29996066:-
Coord C1 exon
chr19:29995968-29996066
Coord A exon
chr19:29995864-29995967
Coord C2 exon
chr19:29995760-29995863
Length
104 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
3' ss Seq
GGGATCTTCCTGCTCCACAGACC
3' ss Score
7.83
Exon sequences
Seq C1 exon
ATCTCTTAGAAAAATCCAGGGTGACATTTCAATTATCCAGTGAGAGAAGCTATCATATTTTTTACCAAATCATGTCCAACAAGAAGCCAGAACTCATCG
Seq A exon
GTAAGTTTCCTTAGTTACAATTCTTATCTTCCAAACCAGTCTCATTGGAAAAATCCCAGAGTCATTTGTGCATTAGACGCTAAAGGGATCTTCCTGCTCCACAG
Seq C2 exon
ACCTGCTTCTCATTTCAACCAACCCCTTTGACTTCCCCTTCGTGAGCCAGGGAGAGGTCACCGTGGCCAGTATCGATGACAGTGAGGAGCTGTTGGCCACTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025337:ENSBTAT00000035550:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTTAGAAAAATCCAGGGTGACA
R:
ATCAGTGGCCAACAGCTCCTC
Band lengths:
202-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]