Special

HsaINT1024055 @ hg38

Intron Retention

Gene
Description
myosin heavy chain 13 [Source:HGNC Symbol;Acc:HGNC:7571]
Coordinates
chr17:10354680-10354993:-
Coord C1 exon
chr17:10354895-10354993
Coord A exon
chr17:10354784-10354894
Coord C2 exon
chr17:10354680-10354783
Length
111 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
3' ss Seq
GGGATATCTGTGTTTCACAGACC
3' ss Score
7.12
Exon sequences
Seq C1 exon
ATCTGTTAGAAAAATCCAGAGTGACGTTTCAATTATCCAGTGAGAGAAGCTATCATATTTTCTACCAAATTATGTCAAACAAGAAGCCAGAACTAATTG
Seq A exon
GTAAGCTCTTGGAATACCTTTCTTATGTTCCAAATCGGTGACGTTGGGAAAAAAAAAACAACCCAGAGTAAGTTATGCATAAGCCATTAAAGGGATATCTGTGTTTCACAG
Seq C2 exon
ACCTGCTTCTGATCTCCACCAACCCCTTCGACTTCCCCTTCGTGAGCCAAGGAGAGGTCACGGTAGCCAGTATCGATGACAGTGAAGAACTGCTGGCGACAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006788:ENST00000252172:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.0=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
ALTERNATIVE
Zebrafish
(danRer10)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTTAGAAAAATCCAGAGTGACGT
R:
ATCTGTCGCCAGCAGTTCTTC
Band lengths:
202-313
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains