GgaINT0129018 @ galGal4
Intron Retention
Gene
ENSGALG00000000779 | MYH13
Description
myosin, heavy chain 13, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:7571]
Coordinates
chr18:326881-327175:-
Coord C1 exon
chr18:327077-327175
Coord A exon
chr18:326985-327076
Coord C2 exon
chr18:326881-326984
Length
92 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
GGTGCACTCTACGCTTGCAGATC
3' ss Score
6.86
Exon sequences
Seq C1 exon
ATCTGCTGGAGAAATCCAGAGTGACTTTCCAGCTAGCCAGTGAAAGGAGCTATCATATTTTTTACCAGATCATGTCCAACAAGAAACCAGAGCTCATTG
Seq A exon
GTGAGTGCCAGCACTACTGGGCTCTGCTCAGCGAGTTTCCTTTGCACTCTGACCTGCCCCCTTACCACCAAGGGTGCACTCTACGCTTGCAG
Seq C2 exon
ATCTCCTTCTCATCTCGACCAACCCCTACGACTTCGCCTACGTGAGCCAAGGGGAAATTACCGTTGCCAGCATTGATGACAGCGAAGAGCTGTTGGCGACAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000779:ENSGALT00000001184:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGTGACTTTCCAGCTAGC
R:
GCTGTCATCAATGCTGGCAAC
Band lengths:
167-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]