HsaINT0107554 @ hg19
Intron Retention
Gene
ENSG00000006788 | MYH13
Description
myosin, heavy chain 13, skeletal muscle [Source:HGNC Symbol;Acc:7571]
Coordinates
chr17:10231183-10233840:-
Coord C1 exon
chr17:10233704-10233840
Coord A exon
chr17:10231439-10233703
Coord C2 exon
chr17:10231183-10231438
Length
2265 bp
Sequences
Splice sites
5' ss Seq
GAGGTGACA
5' ss Score
3.85
3' ss Seq
GAGTCCTAATGGGTGTACAGGGA
3' ss Score
0.56
Exon sequences
Seq C1 exon
GTGTTTTTCAAAGCTGGGCTCCTGGGACTTTTGGAGGAGATGAGAGATGAGAAGCTGGTGACGCTGATGACAAGCACGCAGGCGGTGTGCAGGGGGTACCTGATGCGGGTGGAGTTCAAGAAGATGATGGAGAGGAG
Seq A exon
GTGACACAGACCCTCACCTCCACCTTATCCTGCCCTCTCTGCTTAGCAGCTGATTGTCACTTCCTGCTTTTAGTCTTGGGATTTCCATGTGCTTGCTCTCTTTCCTTCATTTGTTTAACCCACATCTACTGAGCGGCAATCCTGGGCTGGGTGCTCTGCATGGCGCTGGGGAGACAGAAATGAACCCTCCCTCACAGGGTCACAAAGGAGTGGGAAGCAGACGCATGTATGGCTGGTTTTAATGCCTGTGACAAGCTCAATGTTCGAGTTATAGTCGGGGGATAGGGAACTGGCAAGAATAAGCCCCCAGCCTGATTAGGGGGTTGGAGTTGGCATGAAGGTGTCAGCAAGAAGAAAGCACTTTCTTTTTTCCTTTTTTTTTTTTTTTAGACAGAGTCTTGCTCTGTCATCCAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACTGCAATCTCCAGCTTCCAGGTTCAAGCGATTCTCCCGCCTCAGCCTCCCTAGTAGCTGGGATTACAGGCATGCACCACCACGCCCGGCTATTTTGTTTTTTGTTTGTTTGTTTTGTTTTGTTTTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCGCCCGCCTTGGCCTCCCACATTGCTGGGATTACAGGCGTAAGCCACTGCGCCCAGCTGACGAAAGCACTTTCTGAAGCAAGCTCTACACAACCTGAGAGTGGGTGGTCTGGGAGGAAGCCCGACAAGCAGGTGGCTGTCATTGGAATAGAGAGCAAGAGGCAGGTAGTGGAGGTCCCTATGTGTCACATTCAGAAACCCAGGCTGCACCCTGTCATTGATGGAGAGCTGTAGAAGGTGTGTGCAGAGACAAGGGGTAGGATTGCATCACTCTGGCAGCTAGGAGAGTGAACACAAAGGCTATGACGGGGCAAGGCCACAGTGTGGTAGAAGTCCAAGTAAGGGATGACAAGGACCTGAAGTAGGACATAGTTGATGGGTGAGAGAGGAGGGCATGGATTAAAGGAATGTTTAAGTCTTTTTCCTTTGATAATTCAAGAGAAGGAATAGCAGCATTGATGACTAGTCACCTGCAGGGATTGGAGGGAGAGGGGAGTGTGGGAGGGAGCCTGTTCTCCCTGGTTCCCTGATCCCCTGTGTGGCTCTAACTGTCAGAGCCATAATGAACCGCCACCATGTATGCGTCAGGAATCACTCCCAGGCATCGAGCTTGGTGAAGCACATGGAAGCCAGCACGGAGATGAAAAGAATCTCAAGAAGGGAAAGAGAAGCCAGTGTTCAGGAATCCATAAGCTATGTAAATATAAAGCTGTGGAGGGTGAAGGGGAGGAGATCATGTGGGTGACACTGGGATGAAAACAGCAGCAGAAATTAGGAATACAGGCTGGTTGTGGTGGCTCACGCTTGTAACCCTAGCACTTTGGGAGGCCAAGGCGGGCAGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGACCAACATGGTGAAACCCAGTCTTTACTAAAAATACAAAAATTAGCCAGGCGTGGTGGCGCATACCTGTAATCCCAGCTACTTGGGAGGCTGAGCCAGAAGAATTGCTTGAACCTAGGAGGCGGAGGTTGCAGTGAGCCGAGATTGCACCATTGCACTCTAGCTTGGGCAACAGAGCAAGACTCCATCTCAAAAAAAAAAAAAAAAACGAATAGAAAAGAAAGAAATTGGGAAGACAGATCAACTCTACCAGGGCAAGAGACTGGGAAATGACCAAGGACAAGTCCTGGGTTTCTCCAGCAGGAAGAGGAACCCCATATGGCAAAATGCAGTGAAACAGGGAAAATGTGGATGGAATTTAAGGCAGAGAAAGTTTCAAAAGTTAAGAGCTGATTAATACATCAAACATGGGAGAAAGACCCAATAGAATAGGAATGAAAGCTATTCCTTGCATTGAGCATTAGGAGGTCACGGACGCCCTCAGGCAGGGCACTCTCAGTAGGGTGGTGGGAAGGGCAGCCAGGTGACCAGGAGCCCGCAGGTAGCTCCACGCCCTCTCCTACCTTCCAACCTGTGCACGTACCTCTGTTTCCTCTGCCCCTCATTTGCAGACCTACTCTGGATCCAGAGGATCTGCCAAGCTTGGCTGCACCTCCTTCCCACCTAACCGAGAAAGACGGAGGATGGGGTCCGTCGGGGACAGGTTGGGGGTGCAGAGACCAGACCTTGCTGGATTTATTAATTTGAGTCCTAATGGGTGTACAG
Seq C2 exon
GGACTCCATCTTCTGCATCCAGTACAACATCCGCTCTTTTATGAACGTCAAGCACTGGCCCTGGATGAACCTGTTCTTCAAAATCAAGCCCCTGCTGAAGAGTGCAGAGGCCGAGAAGGAGATGGCCACCATGAAGGAAGACTTTGAGAGGACCAAGGAAGAACTGGCCCGATCTGAGGCTCGCCGGAAGGAGCTGGAGGAGAAAATGGTCTCCCTCCTGCAGGAGAAGAATGACCTCCAATTGCAGGTCCAGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006788-MYH13:NM_003802:21
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.201
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=6.5),PF0061222=IQ=WD(100=41.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)