MmuINT0103305 @ mm9
Intron Retention
Gene
ENSMUSG00000060180 | Myh13
Description
myosin, heavy polypeptide 13, skeletal muscle [Source:MGI Symbol;Acc:MGI:1339967]
Coordinates
chr11:67163072-67163991:+
Coord C1 exon
chr11:67163072-67163208
Coord A exon
chr11:67163209-67163735
Coord C2 exon
chr11:67163736-67163991
Length
527 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATT
5' ss Score
8.88
3' ss Seq
CAAGTCCTGTGGGTGCCCAGGGA
3' ss Score
4.02
Exon sequences
Seq C1 exon
GTGTTTTTCAAAGCTGGGCTCCTGGGGCTTCTGGAAGAGATGAGAGACGAGAAGCTGGTGACCCTAATGACACGCACACAGGCAGTGTGCAGGGGCTACCTGATGAGGGTGGAGTTCAAGAAAATGATGGAGAGGAG
Seq A exon
GTAATTCATCTCTCTTACCCCCCCCCCCTTCCTACTCAGCACCTGGAAATCACTTCCTTCTTTGGGTCTTTGCATGTTCATTCATTCATTCATCCATTCATTCATTCATTTGTCCAGTAGTGACTGAGCAGCCATCCTGTGCACTGGAGATAGGGAAACAAACCCTGCCTTCCAACAGTTCACGGATACATGGAAAGCAGACACACGCAGAGAGAGATTCAATACTTCAGACAATGGCAGTTTTATAGTTAGGCAAAGGAGGACCTGGCACAGCAAGCCTCTGGCCTGGTTCACATACTGGAGTTGGCATGGAGTTGGCTCAGCCTTCCTTCTTCCTAATCTTTTCCTGCTGCATCCAGTGCCCTCATTCACATAGACTCATAGGCTCTGCAATGCTTAGGTGTACCACCTCCTACCCAGCTGGGAAGGATGAAGATTCTGAGACCTGTCGGGGAGGGGTTCAAATGGAAAACGAACTAGCAAGTACAATACGATGGGTAATTAATCCAAGTCCTGTGGGTGCCCAG
Seq C2 exon
GGAGTCCATCTTCTGCATCCAGTACAATGTTCGTTCCTTCATGAACGTCAAGCACTGGCCCTGGATGAACCTGTTCTTCAAGATCAAGCCCCTGCTGAAGAGCGCGGAGGCGGAGAAGGAGATGGCCACCATGAAGGAGGACTTCGAACGAGCCAAGGAAGACCTGGCTAGATCTGAGGCTCGTCGGAAGGAGCTGGAGGAGAAAATGGTCTCCCTGCTGCAGGAGAAAAATGACCTTCAGTTGCAAGTCCAGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060180-Myh13:NM_001081250:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.058
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=6.5),PF0061222=IQ=WD(100=41.3)
A:
NA
C2:
PF0157614=Myosin_tail_1=PU(26.9=61.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCAAAGCTGGGCTCCTGG
R:
ACCATTTTCTCCTCCAGCTCCT
Band lengths:
343-870
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: