BtaINT0097153 @ bosTau6
Intron Retention
Gene
ENSBTAG00000025337 | MYH13
Description
myosin, heavy chain 13, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:7571]
Coordinates
chr19:29976529-29978072:-
Coord C1 exon
chr19:29977936-29978072
Coord A exon
chr19:29976785-29977935
Coord C2 exon
chr19:29976529-29976784
Length
1151 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATG
5' ss Score
5.22
3' ss Seq
CCAGTCCTAACAATACACAGGGA
3' ss Score
3.1
Exon sequences
Seq C1 exon
GTATTCTTCAAAGCTGGGCTCCTGGGCCTCTTGGAGGAGATGAGGGACGAGAAGCTGGTGACCCTGATGACACGCACGCAGGCTTTATGCCGGGGCTACCTGATGCGGGTAGAGTTCAAGAAGATGATGGAGAGAAG
Seq A exon
GTGATGCAAGCTCTCGCCTCCCTGCCCTCCTCCCGGGAGCTGACCATCGCTTCGTGCTTTAATCTTAAGATGTTCACTAATTTGTCCCACATTTACTGAGCCACGGTTCTGTTCTGGGGCCTCTGCTTGACACTGGGGAAGCAGAAATGATCCCTGGCCTCCAGGAGCCCACAGAGGAGTGGGAAGCAGACACCTGCTCGGCTAGTTTTGTGGACGGATTGGGGGCTGGGGTTGGCATGAAAGGGCAGCAAAAAACAAAGAGCTTTCCAAAGGAGGTTTTGCATGGCTGGAGGAAGGGTGGCCTGTGGGTTGGGGGGAGCAAAAGCAGGACACTTGACTGAAGCGAGGAGAGGCTGGCAGTGGAGGTCCCCACCTGCCACCTTGAAGAGCCCAGGTTAAATCTTCCTCTTGATGGGGAGCCATGAAGATGAGTGAGAGGATCGGATTTGTTTCAATAGCTCAGACAGGTCACCTGGGGGACTTTCCTGGCAAGCCAGTGGTTAAGACTCCATGCTTCCACTGCAGGAGGCACAGGTTTGATCCCTGTTCCAGGAAGTAAGATCCCGCTTGCCACACGGCGTGGCCATAAAAAAAAAGCACACATACTCAGAGAGGTCACTGGCAGCCGCAAGAAGAGCAGGCCTGAAGGCACAAGAAGGGGAAGGCCAGGCTGTAGCAGAAGTCCAAATAGAAGATGACAGGACCTGAATTAGCAAACAGGATGGAAAGGATCGAATGAAGCTTGGAGGGCCTTCGTCCTTCAGTAATTCAACAGGAGGAACAGCAGCACTGTGGGCCAGTCCTGTGCGGGGATTCCCTGCGACCCCTTCCCCCTGATTCCCTGTATTCCCCTGTCCTTCACTACCTCCCGGAGTTTGCTCAGACTGACAACCTTAGGGTGAGCATTTTCAGTAGGGTGGTGGAGGTGGAAGCCAGGTGGATGGCACCTCTCTCACCTCCTAAATTTGCACATGCTGTTTCCTCTCCTCTTCGTTTCCAGAACAGACTCTGGAGCTCATGGGATGGGTGCAGCCAAGCTGCACCTCTTCCCACCTGACCCATAAGGGTGAAGGTCTTGGGCCCCACGGGGGCAGGCGGGTGGAGACTGCACCTTGCTGTGGTCCATTAACCCCAGTCCTAACAATACACAG
Seq C2 exon
GGACTCCATCTTCTGCATCCAGTACAACATCCGATCTTTTATGAACGTCAAGCACTGGCCCTGGATGAACCTGTTCTTCAAGATCAAGCCCCTGCTGAAGAGCGCGGAGGCCGAGAAGGAGATAGCCACCATGAAGGAAGACTTTGAGAGAGCCAAGGAAGAACTGGCCAGATCTGAGGCTCGCCGAAAGGAGCTGGAGGAGAAAATGGTGTCCCTGCTGCAGGAAAAGAATGACCTCCAGTTGCAGGTCCAGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025337:ENSBTAT00000035550:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.047
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=6.5)
A:
NA
C2:
PF0157614=Myosin_tail_1=PU(23.3=61.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTCAAAGCTGGGCTCCTG
R:
GCAGCAGGGACACCATTTTCT
Band lengths:
355-1506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]