HsaINT1024065 @ hg38
Intron Retention
Gene
ENSG00000006788 | MYH13
Description
myosin heavy chain 13 [Source:HGNC Symbol;Acc:HGNC:7571]
Coordinates
chr17:10327866-10330523:-
Coord C1 exon
chr17:10330387-10330523
Coord A exon
chr17:10328122-10330386
Coord C2 exon
chr17:10327866-10328121
Length
2265 bp
Sequences
Splice sites
5' ss Seq
GAGGTGACA
5' ss Score
3.85
3' ss Seq
GAGTCCTAATGGGTGTACAGGGA
3' ss Score
0.56
Exon sequences
Seq C1 exon
GTGTTTTTCAAAGCTGGGCTCCTGGGACTTTTGGAGGAGATGAGAGATGAGAAGCTGGTGACGCTGATGACAAGCACGCAGGCGGTGTGCAGGGGGTACCTGATGCGGGTGGAGTTCAAGAAGATGATGGAGAGGAG
Seq A exon
GTGACACAGACCCTCACCTCCACCTTATCCTGCCCTCTCTGCTTAGCAGCTGATTGTCACTTCCTGCTTTTAGTCTTGGGATTTCCATGTGCTTGCTCTCTTTCCTTCATTTGTTTAACCCACATCTACTGAGCGGCAATCCTGGGCTGGGTGCTCTGCATGGCGCTGGGGAGACAGAAATGAACCCTCCCTCACAGGGTCACAAAGGAGTGGGAAGCAGACGCATGTATGGCTGGTTTTAATGCCTGTGACAAGCTCAATGTTCGAGTTATAGTCGGGGGATAGGGAACTGGCAAGAATAAGCCCCCAGCCTGATTAGGGGGTTGGAGTTGGCATGAAGGTGTCAGCAAGAAGAAAGCACTTTCTTTTTTCCTTTTTTTTTTTTTTTAGACAGAGTCTTGCTCTGTCATCCAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACTGCAATCTCCAGCTTCCAGGTTCAAGCGATTCTCCCGCCTCAGCCTCCCTAGTAGCTGGGATTACAGGCATGCACCACCACGCCCGGCTATTTTGTTTTTTGTTTGTTTGTTTTGTTTTGTTTTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCGCCCGCCTTGGCCTCCCACATTGCTGGGATTACAGGCGTAAGCCACTGCGCCCAGCTGACGAAAGCACTTTCTGAAGCAAGCTCTACACAACCTGAGAGTGGGTGGTCTGGGAGGAAGCCCGACAAGCAGGTGGCTGTCATTGGAATAGAGAGCAAGAGGCAGGTAGTGGAGGTCCCTATGTGTCACATTCAGAAACCCAGGCTGCACCCTGTCATTGATGGAGAGCTGTAGAAGGTGTGTGCAGAGACAAGGGGTAGGATTGCATCACTCTGGCAGCTAGGAGAGTGAACACAAAGGCTATGACGGGGCAAGGCCACAGTGTGGTAGAAGTCCAAGTAAGGGATGACAAGGACCTGAAGTAGGACATAGTTGATGGGTGAGAGAGGAGGGCATGGATTAAAGGAATGTTTAAGTCTTTTTCCTTTGATAATTCAAGAGAAGGAATAGCAGCATTGATGACTAGTCACCTGCAGGGATTGGAGGGAGAGGGGAGTGTGGGAGGGAGCCTGTTCTCCCTGGTTCCCTGATCCCCTGTGTGGCTCTAACTGTCAGAGCCATAATGAACCGCCACCATGTATGCGTCAGGAATCACTCCCAGGCATCGAGCTTGGTGAAGCACATGGAAGCCAGCACGGAGATGAAAAGAATCTCAAGAAGGGAAAGAGAAGCCAGTGTTCAGGAATCCATAAGCTATGTAAATATAAAGCTGTGGAGGGTGAAGGGGAGGAGATCATGTGGGTGACACTGGGATGAAAACAGCAGCAGAAATTAGGAATACAGGCTGGTTGTGGTGGCTCACGCTTGTAACCCTAGCACTTTGGGAGGCCAAGGCGGGCAGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGACCAACATGGTGAAACCCAGTCTTTACTAAAAATACAAAAATTAGCCAGGCGTGGTGGCGCATACCTGTAATCCCAGCTACTTGGGAGGCTGAGCCAGAAGAATTGCTTGAACCTAGGAGGCGGAGGTTGCAGTGAGCCGAGATTGCACCATTGCACTCTAGCTTGGGCAACAGAGCAAGACTCCATCTCAAAAAAAAAAAAAAAAACGAATAGAAAAGAAAGAAATTGGGAAGACAGATCAACTCTACCAGGGCAAGAGACTGGGAAATGACCAAGGACAAGTCCTGGGTTTCTCCAGCAGGAAGAGGAACCCCATATGGCAAAATGCAGTGAAACAGGGAAAATGTGGATGGAATTTAAGGCAGAGAAAGTTTCAAAAGTTAAGAGCTGATTAATACATCAAACATGGGAGAAAGACCCAATAGAATAGGAATGAAAGCTATTCCTTGCATTGAGCATTAGGAGGTCACGGACGCCCTCAGGCAGGGCACTCTCAGTAGGGTGGTGGGAAGGGCAGCCAGGTGACCAGGAGCCCGCAGGTAGCTCCACGCCCTCTCCTACCTTCCAACCTGTGCACGTACCTCTGTTTCCTCTGCCCCTCATTTGCAGACCTACTCTGGATCCAGAGGATCTGCCAAGCTTGGCTGCACCTCCTTCCCACCTAACCGAGAAAGACGGAGGATGGGGTCCGTCGGGGACAGGTTGGGGGTGCAGAGACCAGACCTTGCTGGATTTATTAATTTGAGTCCTAATGGGTGTACAG
Seq C2 exon
GGACTCCATCTTCTGCATCCAGTACAACATCCGCTCTTTTATGAACGTCAAGCACTGGCCCTGGATGAACCTGTTCTTCAAAATCAAGCCCCTGCTGAAGAGTGCAGAGGCCGAGAAGGAGATGGCCACCATGAAGGAAGACTTTGAGAGGACCAAGGAAGAACTGGCCCGATCTGAGGCTCGCCGGAAGGAGCTGGAGGAGAAAATGGTCTCCCTCCTGCAGGAGAAGAATGACCTCCAATTGCAGGTCCAGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006788:ENST00000252172:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.163
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=6.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains