HsaINT0107577 @ hg19
Intron Retention
Gene
ENSG00000006788 | MYH13
Description
myosin, heavy chain 13, skeletal muscle [Source:HGNC Symbol;Acc:7571]
Coordinates
chr17:10263277-10263505:-
Coord C1 exon
chr17:10263478-10263505
Coord A exon
chr17:10263389-10263477
Coord C2 exon
chr17:10263277-10263388
Length
89 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
GTTTACTTTTAAATTGGCAGCGG
3' ss Score
4.47
Exon sequences
Seq C1 exon
ATCGAGACAACCAGTCTATCCTCATCAC
Seq A exon
GTGAGTAACACCTCTTTGTACCATCATGACTTGGAAACCAGTGCCCTCCCTTCCACTCTCCTTTATCCCGTTTACTTTTAAATTGGCAG
Seq C2 exon
CGGAGAATCCGGGGCTGGGAAGACTGTGAACACCAAGCGTGTCATCCAGTATTTTGCAACAATTGCAGTTACCGGGGACAAGAAGAAGGAGACACAGCCAGGCAAAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006788-MYH13:NM_003802:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.289
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(1.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAACCAGTCTATCCTCATCAC
R:
CTGCATTTTGCCTGGCTGTGT
Band lengths:
135-224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)