GgaINT0129014 @ galGal4
Intron Retention
Gene
ENSGALG00000000779 | MYH13
Description
myosin, heavy chain 13, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:7571]
Coordinates
chr18:333114-333570:-
Coord C1 exon
chr18:333543-333570
Coord A exon
chr18:333226-333542
Coord C2 exon
chr18:333114-333225
Length
317 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
CAGTATTTTCCTTCCAACAGTGG
3' ss Score
7.26
Exon sequences
Seq C1 exon
ATCGTGACAATCAGTCAATCCTTATCAC
Seq A exon
GTGAGTATATTTTGATATGTGTGACAAAGCTGACCACATAATCACAGAATTGTAAAATGGCTTGGATTGGAAAGGACCTCAAGGACCACCAAGTTCTAACCCCCTGCTGTGGGCTGCCCTAACCAGATCAGGCTGCCCAGCGTCCCATCCAACCTGGCCCTGGGCATGTCCAGGGATGGGGCACCCACATTTCTCTGGGTAGTGTGTATCAGAGCCTCACCACCCTCTGAGTAAAAAAAACCTTCATTCTAATATCTACTCTGATAGAGAAGTAAAAAAGGTCCCTGTTTACTATAACAGTATTTTCCTTCCAACAG
Seq C2 exon
TGGAGAATCTGGTGCAGGGAAGACTGTGAACACAAAGCGTGTCATCCAGTATTTTGCAACAATCGCAGTTACTGGTGAGAAGAAGAAAGACCAACAGCCTAGTAAAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000779:ENSGALT00000001184:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.289
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(1.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]