HsaINT1024084 @ hg38
Intron Retention
Gene
ENSG00000006788 | MYH13
Description
myosin heavy chain 13 [Source:HGNC Symbol;Acc:HGNC:7571]
Coordinates
chr17:10359960-10360188:-
Coord C1 exon
chr17:10360161-10360188
Coord A exon
chr17:10360072-10360160
Coord C2 exon
chr17:10359960-10360071
Length
89 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
GTTTACTTTTAAATTGGCAGCGG
3' ss Score
4.47
Exon sequences
Seq C1 exon
ATCGAGACAACCAGTCTATCCTCATCAC
Seq A exon
GTGAGTAACACCTCTTTGTACCATCATGACTTGGAAACCAGTGCCCTCCCTTCCACTCTCCTTTATCCCGTTTACTTTTAAATTGGCAG
Seq C2 exon
CGGAGAATCCGGGGCTGGGAAGACTGTGAACACCAAGCGTGTCATCCAGTATTTTGCAACAATTGCAGTTACCGGGGACAAGAAGAAGGAGACACAGCCAGGCAAAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006788:ENST00000252172:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.289
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(1.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAACCAGTCTATCCTCATCAC
R:
CTGCATTTTGCCTGGCTGTGT
Band lengths:
135-224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains