MmuINT0103327 @ mm9
Intron Retention
Gene
ENSMUSG00000060180 | Myh13
Description
myosin, heavy polypeptide 13, skeletal muscle [Source:MGI Symbol;Acc:MGI:1339967]
Coordinates
chr11:67144368-67144597:+
Coord C1 exon
chr11:67144368-67144395
Coord A exon
chr11:67144396-67144485
Coord C2 exon
chr11:67144486-67144597
Length
90 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
CATTTATTTTTAATTGACAGTGG
3' ss Score
5.43
Exon sequences
Seq C1 exon
ATCGAGATAACCAATCCATCTTGATCAC
Seq A exon
GTGAGTTAGCCCATGTTCACACCACAATGGTTTTAGAGCCCGCACCTCCTCTTCTACTTCTTTTTAATCCCATTTATTTTTAATTGACAG
Seq C2 exon
TGGAGAATCTGGGGCTGGAAAGACAGTGAACACGAAGCGTGTCATCCAATACTTTGCAACAATTGCAGTCACCGGGGACAAGAAGAAAGAGCAGCAGCCGGGCAAAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060180-Myh13:NM_001081250:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.289
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(1.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGATAACCAATCCATCTTGA
R:
CATTTTGCCCGGCTGCTG
Band lengths:
136-226
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: