BtaINT0097173 @ bosTau6
Intron Retention
Gene
ENSBTAG00000025337 | MYH13
Description
myosin, heavy chain 13, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:7571]
Coordinates
chr19:29999177-29999757:-
Coord C1 exon
chr19:29999730-29999757
Coord A exon
chr19:29999289-29999729
Coord C2 exon
chr19:29999177-29999288
Length
441 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
TCTCACTTTTAAATCAACAGTGG
3' ss Score
5.71
Exon sequences
Seq C1 exon
ATCGAGACAACCAGTCCATCCTCATCAC
Seq A exon
GTGAGTAACCCATGTCTGCTCTAGGATGACTTGGAAGAGGGCCATCCATCCCTTCCACTCTCCTTTATCTCACTTACTTTTTTAAAATATATATTTTATTCAAGTATAGTTGATTTACAATGTTGTGTTAACTTCTCCTGTACAGCAAAGTGATTCAGGTATATATGTGTATATATTCTTATAGATACAATTCTTATATATGCAATTATATATATACAATATATTTCCATATTTTTCCCATGGTTTATCACAGGATATTAAATATTGTTTCCTGTGCTATACGGTAGGACCCAGGTGCTTATCCATCCTACATATAATAGTTTGCATCTTCTAATCCAAAACTTCCGGTCCATCTGTCTTTCATCTCCCCTCTCCTGTTGGGCCTCTTTCCACCCATGGGTCTGTTCTCTATGTCTGCATATCTCACTTTTAAATCAACAG
Seq C2 exon
TGGAGAATCTGGAGCTGGGAAGACGGTGAACACCAAGCGTGTCATCCAGTACTTTGCAACAATTGCAGTCACTGGAGACAAGAAGAAGGAGCAGCAGCCAGGCAAGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025337:ENSBTAT00000035550:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.289
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(1.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]