HsaINT0107578 @ hg19
Intron Retention
Gene
ENSG00000006788 | MYH13
Description
myosin, heavy chain 13, skeletal muscle [Source:HGNC Symbol;Acc:7571]
Coordinates
chr17:10261052-10263388:-
Coord C1 exon
chr17:10263277-10263388
Coord A exon
chr17:10261145-10263276
Coord C2 exon
chr17:10261052-10261144
Length
2132 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTCTTCTTGTTTATTATTAGGGA
3' ss Score
8.65
Exon sequences
Seq C1 exon
CGGAGAATCCGGGGCTGGGAAGACTGTGAACACCAAGCGTGTCATCCAGTATTTTGCAACAATTGCAGTTACCGGGGACAAGAAGAAGGAGACACAGCCAGGCAAAATGCAG
Seq A exon
GTGAGCAGCCCCACCTGCATCCGGAGGCTTACTGGAATAAGTATACTTTAAAGCGTGGATGAGCACCAAGTGTATGCAGGGTATGCGCTCAGTAGAAACGGCAAATAGGAAAAATTCTTTCTTTCCTCTCTGTATCCTCACACAGAACGTGTCTGCCATCAAATGTATGGGGTTTTTCCATGCCAAACAATTCTCTAATTCTCTGCAGACACCAACTGGGTGTCCTACAATTCAATTCAATTCTGATACTAACTACCTAGAGAAAGCATCAAATCACACAAGTTAAGGGCTCAGTCCTGCAAAACTGACCCCACTTTGGATACCAGGGACCAGTCCGGGCCTCCTGAACTTCTAAGCAAGCAGCTATTAATTGGGAGGAGCTCACGACCCCCGTCTCAGGTTTGGTAATTACCTAGAGTGCTTCACAGAACTCAGAGAAACACTTTGCTTACATTTGCCAGTTTGTTATAAAGGCTGTTACAAAGGATGCAGAGGAAAAGCCAAGTGGAAAAGATGTCTAGGGCAAGGTATGGGGGAGGGGCAGGGTCTCTGCAGGTGACATCCTCCCAGTACCTCTAGGTGTTCATCAACCTGGAACCTCTCTGAAGCCTTCTGTGTAGGGTTTTTATAGAGGTTGCATTACATGAGCATGATTAATTAAATCACTGGCCATTGATGATTGACTCAACCTCCAGCCCTTCTTTCCTTCCCAGGGGTCAGGAATAGGGCTGAAAGTTCCAACTCTCTAATCACGCGGTTGGTTCCCTGGCAGCCAGCCCCCATCCTGAGCTGTCCAGGACCCCGAAGCCACCAATCATCTCATTAGCACACAAAAAGACATTTATCACTTCAGATATTCCAAGGGTTTTAGGAGCTGCGTACCAGGAAACTGGAAAAAGACCAAAATATACCATTCCTATTACATCACAGTATCACATGGAGCAAAGCAGGAAGTGGTTCCACCAGAATGGACTTGAGTTCTAGCACCAGCTCCATCACCTACAGTTGAGGGACCTTGACCAACTCCACATCCTCCTCTGGAGAAGGAATGTTTACACCAGTGGTTTTCAAACTGGAGTACACATCAGAATCAACAGGAGAGATTCTTAACAAAGGGCGGCAGAACCCAGGCCCAGAATTCCTGATTGTGTAGATCTAGGGTGGGACCTCATAGTTTGCATCTTTTTTTCCTTTTTATTTTGGAGAGACAGGGTCTCACTCTGTCACCCAGGCTGGAGTACAGTGGCACACCATCATAGCTCACTGTGACTTCAAACTCCTGGGCTCAAGCGATCATCCTTCAGCCTTCCAAGTAGCTAAGACTACAGGAACCACCATGCCTGGCTAGTTTTTTTTTAATTTTTTGTAGAGATGGAGTCTCACTATCTTTCCTAGGCTGGTATCAGACCGTTGGCCTCAAGTAATCCTCCTGCCTCAGCCTTCCAAAGTGCTAATTACGAGTGTGAACTACCATACCTGGCATTTCTCATATATTCCCAGGTAGTGTTCATGCTGCTGGTCCAGGGACCACACTTTGAGAACCACTAGGTTTGACAGTAGTTTCTAAATTGCTCTGGACCCAGAAGGATAAAGCAGTCATGGAGGTGAAGGTGAAAACTCTGCTTTCTGTAGTGGATTTCTGAATAATCATTCTCATAAGTTTTTGCTACATAAAAAACCTTTTTGAGAACCACTGTTGTTATTGTATCATCCCCTGGGTCGCTTGCTTTGCTCACATTCTATTTCTCCTTCTGAAGACAAATATCTATATTAGGTGGGTCATATTACATGCAATAACAGAGGTGCATGTTATAAAAATCCATGATTTATAATGAAATGTTATCAGAAAGGCAGTCTGGATGTTCTGATGGAGGGAGTAATATTCCTGCCTAGAACCTGGCATGACCAGAAGTCACTTCAATGCTATGCTAATAAGAACCTGTCTAAGATGGTACCTTGAAGACGCCTCAGGTCTGGTGGGGGTGGGGGCGTGGGTGCTGCACTGACCACCAGGTGGAGCTGGTCGACATCTCTACCTGAACCTGCCCAGAGTACCCACCGTTTTAGTCATCAAGGGGCTACTTTAGAAAACCATCCAAAGTCCTCTTTTTCCTCTTCTTGTTTATTATTAG
Seq C2 exon
GGAACCCTAGAGGATCAGATCATCCAGGCCAACCCACTGCTGGAGGCCTTTGGAAATGCCAAGACTGTGAGGAATGACAACTCCTCAAGATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006788-MYH13:NM_003802:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.289 A=NA C2=0.065
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)