GgaINT0129015 @ galGal4
Intron Retention
Gene
ENSGALG00000000779 | MYH13
Description
myosin, heavy chain 13, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:7571]
Coordinates
chr18:327425-333225:-
Coord C1 exon
chr18:333114-333225
Coord A exon
chr18:327518-333113
Coord C2 exon
chr18:327425-327517
Length
5596 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
CCATTTTCTCCCTGAACTAGGGA
3' ss Score
8.54
Exon sequences
Seq C1 exon
TGGAGAATCTGGTGCAGGGAAGACTGTGAACACAAAGCGTGTCATCCAGTATTTTGCAACAATCGCAGTTACTGGTGAGAAGAAGAAAGACCAACAGCCTAGTAAAATGCAG
Seq A exon
GTATGTGACTGGTATCCTCTTCTAATGTTTGGTTGAGAATGTGCTCGTGGAGCAGAAGCAATCACTGCAGATTTCTACATTGTCAGACTATCAAAATAAAGTGTAGTGTGACTGAGGTGATGGGCAGGATACACTGTCTGAGCACACCCAGTTACCCACTGCCCAGCTTCCATCCCCCTTAACAATAGTGAAACTCTACCCCAAGAAACAGAATCATTGAATCATAGAATGGATTGGGTTGGAAGTGACCCTAAAAATCACTTAGTTCCAACCACCCTGTCATAGGCAAGAACACCGTGCACTAGACCCAGTTACTCAAAGCCCCATCCAATCTGGCCTTGAACACTTTCACAGATGGGATATCCACATCTTCTCTGGGCAGCCTGTGCCAATGCCTCACAGTTCTCATAGTGAGAAATTTCTTCCTATTGTCTACCATAAATCTACCCCTTTGTTGTTTAAAAACATCATCCCTTGTCCCATCACAACACTCCTTGATGAAGATTTCCTTTCCATCCTTCCTGTAACTCTTCCTTTAACTGCTAACAAGCCCCTAAAAGATCTCAGTAGAGCCTTCTCTTCTCCAGACTAAATAACCCCAACTCTTTCATACTGACTTTTTAAGAGGTGCTCTAGGCTTTCTGATCCTTTACCAGACCTGCTGTGATATGCCCATGTCCTTCTAACGCTTGTGGCCTCAGAAATGAATGTAGTACAGTAGGTGGGGTCACGAGAGCAGAGTAGAGAGGATCAGCTCCCTCAAGCTGCTGGCTACACATCTTTTGATGCTGTCCAGGATATGGTTGGCTTTCTGGGCTACAAGTGCACATTGCTAACCCATATTCTCTTTTTTTTTTTACAAAAAAAACCAAAAAAACAAAAAAACAGTACCCCTAAGTCATCCTCTGCAGTGTGGTTATCAGTGTACTCATCACCCAGACTGCATCCATGTTTGGGATTGCCCCAATGGAGGTACACAACCTTGTACATGGCCTTGTTGAACTCTGAGATTCACACAAGCCCACCTCTCAAGTTTGCCAAGGTCCTCCTGGTAGCATTCTTTCCCTCCAGCATCTTGACCACAACATTTAGCTTGGTGTCATCCATAAACTTATTGAGGATATACTCAATCAGACTGTTCATGTCATCAACAAAGATGTCAAATAATACTGGTCACAATACTAGCTCCCAAGGAACACTACTTGTTCTTGGTCTCCACCTGGACATCAAGCCATGGACTGCAACAATTTGAGTGAGACTATACAGCCAATTCCTTATCCATCAAGTGGTCTACCTGTCAAATTCATGTCTCTCAAATTTAGAGACAAGAATGTCATGCGAGACAGTATCAAATGCTTTACACAAGTCCAGGCAGATGACACCAGTTACTCTTCCCTTATTCATCAATGCTGTAACCTCATCATTGCAGGACAAGAAATTTGTCAGGTGTGATTTGTCCTTAGTGAAGCCATGATGGCTCTCCTCCCCAGTCACCTCTTTGTTTTCAATGTGCCTCAGCAGATTCCAGGTGGATCTGCTTCCTGATCTTGTCGGGCACGGAGATGACACTGGTTGGCCTAAAGTTCCCCAGAACTTCTTTCTTTTTCTTTTTAAAATGGGGCTTACCTTTTTTCAGTCAGTGGGAACTTCACTGGACTGCCACAGCTTCTAACATATGAGAGATAGCAGCTTAACAATTTCTTCTGCCAGTTCCCTCCAGACCCTCAGATGCACCTCATCAGCTCTCATGGACTTGTGTACATTCAGATTCCTTGTATGGTCTCCCTCTTGATCTTCTCCTACAGTGCGCAGTTCTTCATTCTCTTGTCTCTGCATTTGGATTCTGTGAGTAGTGTGGTGTGGTGAAGACTGAGGCAAAAAATCACTGAGTACCTCAGCATTTTCCACACAGTCATTCATGCACCCCACCCCTCCCAGTGGGATGTGGGAGAGAACCAGGAAAAAAAAAAAAACAACAAAGTAGAACTCATGGGTTGACTTAAAAAATATTTACTAAGTCAGAAAAGAGAAGAGGAAAAGAGGATGATAGTTATCATAATAATATATACAAAACAAGTGATGCACAAGCAATTGCTCACCAATGCCACTGACCAATGCCAAACAAGTCCCCAAGCAGCAGCAGGTCGCCTGACCAACTCCCCATCATTTTCAAGCTTTTTCTACATTCTACTGTATGGTCTGGAATTTCCCTTTGCCCAGTTTAGCTGAGGTGTCCTGGTCCCTCTCCTACCTCCTTGTGCCCTGCATCCACCCACTGACTGGACATTGCAAGCAGCTGAGAAACTGAAGTATCTTTGGCTCTGTGCAGCACTGTTCAGCAAAAACTGAAACATCAGTGTGTTATGAACAATATTTTTCTCCTAAAGCCAAAGCACAGTGTCTTACCAGACATGATTCCTCCCAGGCTACCTGCCCTTGCTTCCATTCAATGGAAGCTTTCTTTCTGTGTCTGACTTTGTCCAGGAGCTCCTTGTTCATCCCTACAGGCCTCCCAGCATTTTTGCTGGCTTCCTCTTTTTGGGATGCATCATTCTTGGGCTTGGGAAAAGTGATCATTGAATATTATCCAGCTTTCCTTGCCTCCTCTTCCCTCCAGAGTTTTATCATACAGCATTCTACCAAGCAGATCCCCCGAAGAGAACACTTCTGTACTGTAGGAAAGAAGCAAACATCAGTTCCTATTCAATCCTTATTTACACAAGGAAAGCTTTGACCGTAGGCAGGAAGATAATATAAATCTGCACAAGTCTTCTCTGTGATGACAGTCTGCCTGCGTATTGAACCATTAGTATGCTGTGAGATTGGCCATCTCCACACACCCGAGGGCTTTCACGAGCCCTTAAATAAAAGTATATACATTAGGATTTCTTGCCCAGTGGTTGCTGTCTCCCCTTATGTAATGGAATTAATAGTCAGTTCTACATATAAGGCATCACTCCCATGCACATTTGCTGCATTATCTGCAACAAAATATATTGCATTTGATTTTTCTCTCTCTACATTAAGTTTAAAACAGATTAATTAAGTCAACTGTCCTCATTTCTTTCCCAAGATGTTTACACTGAAATAGTTGGCTCCCACTGGCATGAAATTGTGTTTCATTCCCAGCAGAAGAAGTACAGTAACTGTGGACTCCGGAGAGGTCACACTGAAGTTAGAGTAACTTCAGGTGCATCACACAGTAATTTCGACTGGCTTGTTCTTTTGTCCATGATCTGTGTAACAACCCTGAGAGGCAGCATAAGAAAAGGGTTGGACCTGGGACAGCTGGGACCACTTGCCTGACATTAACCTCAGAGAGGAACCTTCCAGGGAAGAAAGCACATGCCCTGATGTCCCTTTCTGCTGAGCAGCCCAGCTGCTGCAATCTGAGCCCAGTGGTGCATTTATATGGCATGGGCTTCATTCCCTAGCACACAGCAAGCAACAAACACCCTCACAGCACAAGTGGCCCCCAAAACTGTGAGGAGGTATGTGCATCAAGGAGGGTGATGCCTGTCAGTGTGCTATTTGAGTACTCAAGGGCACAGTGGATCCTAAGGAAATCCCAAGGCTGAATGCTTTTTCTCGCTGAGAGGCAGGTGTCTGTGATTGATGGGTTGTTATGGCAAAGACAATTTCACCACCAGCACTCTTTCCATCAGCACCATCTCAGTATCTTGGACTCAATTTTCACCAGCTGCTCACTATGCCAGGAGCGATCTCAGCAAAACTTGGAGACAGCTGAAAGATGTACTGATTGATACAAAAGAAAAAAAAAAAAAAAAACCACCAGGTTCTCAGATAGACAACAACCTGTTCTGCCCTCTTCTAAGTTTTTTCACAGAATATTTACTCGGTATTCACAATCTTTATAACAGTAGTATGTTTTTTCTTTTTCATAAGACTACTAAATAAGCAATCTCTTCTTAAGACCATTAAATAAAACACTCAGCTATGGCTCTGTCTAGCCCAGCATCCAGTCTCAGGCACAGAGTGAAATCAGATATCAAGCAACAGCATAAAAATAAAGGAAGTGAGTAATATTTCCCAGGAATGCTTTCTCAGCCTTGAGAAATTTGTAACGCAGGTTGTAGACAGAACTCCAGATTGAACATGTGTAAAGGATTTCAGATCTTCCAAACTGTTCACATTCACAGTGCTACCTAGCATGTTCCCATGTTACAGCTATGCACTAAAATTAAGCTTTTTTGGTGGTGGAATCAACTGCACTGACACACACACATCTCTTAAAATGAGGAAGTTCATTTAGGAAGAGATATGTGAGAGGACACACTAGACTAGGTATTTGAGATTTCTTATGAGAGACAGAGAGAGGGACGCAGAGAGAGCGCTTCATACACCGCTTAGTTTTGTAGGGCTCTTCACGTCCAAACTAATTTAAATCCTTTGCGCCGCCTGCAGACACTATTGGGAAACGCGCTGCCTCCCCGCTGCAACATGCTGCAGGCTGCTGCACCATACTGCAAATGATGTGCAGCACTTTGAGCTCTGCCAATGATCTTTCATCTGGATAAAACTGATGAGTTTGTTTTTTTTTTTTATCTCATTCTTTGCTTTGCTTGGAAACCATCCGTGGGAACACTTTCATTTTCTGACTGCTCAGGGATCGACCATGTCTTTTCTAGGAGCCCAGAGAAAACCTTTCTCTATCATCCCAAAGCAGCATGCTGTGACTCTGCCTTGTGTAACCTTCCTGCACTGTACTGTACAGAAGAGACATAATGTCACAGAAACTTCTTTTCTCAGCCTTTTTTTTTTTCTTTTCCTCCCCCCCCCCCCCCCCTTTTTTTTTCTCCATTCAAAAGAAGCGATACAATGGAGTACAGAAATTTTGCATGTTGATCTTTTCTTCTGCAGTTCCATCCAGTTTCCATCCAGAAAAATAAATAATTAATTAATTAAATAAATAAGGAGGAAAGAAAAGATAAGGAAAAGGAAAGAACTCCAGCCTCCAAGCGTCACTGCTCCCTTTTTTCATCAAGTTTGGTATTTGAGTCTTAGGCTTCACCCATGTTCTACCTCTCTTATCAAAGAGTGTCTGGAGATACACTGCTGCACTCTGAAAGGCTGCTGCTTTTTTGAATGTAACTGAAAAACTTTATATTCTCCCTTGTTAGGTGGGTCCTACTTAAAGCCTTAAGACTGTACCATTTTCTCTGTGTCTTGTGTTTGAGTAACCTCCAGGAAAAAAAAAAAGAAAGAAAAAAGAAAAAAACACCCACTTTCCACATTTTCTTTATCTGTTAATGTCCTTTGTGAGCAGTAAATGGGAATATGGAAATGCCTTTCTCATACAAATGCCAATCTCTCTGCCTTTTGCCATGATGATTCTGTATGAAATGTGCAACATACAGTAGCATGTACAAAAAGGAAACAAAATACAGATCTGTCTTGAAGCACTCTTCCCCTGAAACCAATGACAACATTCTTGAGTGATAGCTAATGAGTGCTTAAAAACAGTGAATTGAAGGTTAAAACAATGTATGAGATGCAAAAATGACCTGTCTGTAATGTATCCCTTGCCATACTTGTTAGCAACTAGTAGTGACGAGCCATTTTCTCCCTGAACTAG
Seq C2 exon
GGAACGCTTGAGGATCAAATCATCAGCGCCAACCCACTGCTGGAGGCCTTTGGTAATGCCAAGACTGTCAGGAATGACAACTCCTCACGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000779:ENSGALT00000001184:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.289 A=NA C2=0.065
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]