BtaINT0097174 @ bosTau6
Intron Retention
Gene
ENSBTAG00000025337 | MYH13
Description
myosin, heavy chain 13, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:7571]
Coordinates
chr19:29998092-29999288:-
Coord C1 exon
chr19:29999177-29999288
Coord A exon
chr19:29998185-29999176
Coord C2 exon
chr19:29998092-29998184
Length
992 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCCTCTTCTATTATTTTTAGGGA
3' ss Score
9.92
Exon sequences
Seq C1 exon
TGGAGAATCTGGAGCTGGGAAGACGGTGAACACCAAGCGTGTCATCCAGTACTTTGCAACAATTGCAGTCACTGGAGACAAGAAGAAGGAGCAGCAGCCAGGCAAGATGCAG
Seq A exon
GTGAGCAGCCTCCTGCCCCTGGAAGCCTTCTGGAATAAGTACAACTTAAATCTTGGGTGAGCACTAGGTATTCTGTGCAGGGCTCTGTGCTCAGCACAGATGTACAGGAAGAGGTCTTGCCTGGGAGTACTTAGGGGACAAGACAATAAATGGCTCCACCTCGTGGACTCAGGCTCTAGCACAGGCCCCATCAGCAACAGCCCAATGACCTTGACCATCTCCACACCCTCCTCTGGAGAAGGAGTGGTTTAGGCCAGAGGTTCTCAGAGGATTGCTAGGCTCCCGGCCCAGGATTTCTGCTTGAAATTCCTATCTCACCTTCACAGTCCTGGCAGGTTGCATTTCTCTCACTTTCCCACTCTTCATGCAGCTGGTCTAGGGACCACACTTTGAGAACCACTGGGCTGGACAATAGTTTCCAGAGAGCCAGAAAGATAAGCAATCATGCATGGAAGGGGGAGAGTGAAAATTCTGCTTTCCATAAGAGGGCTTTTAAATAATAATTTTCATGAAATATTTTATGCAACTTAAAAATATTTTCAAGAATCACTGTTTCTATCATATGGGTCACTTTCGTTGCTCACAGTCTAAATTCTACTTCTGAACCCAAATATCTATATAAATGGACCTGGTGCAGGCAGTAACACAGGTCTGTACTCCAAAAATCTGTATTTTATAATGAAATGTTGTCAGAGAAAAAAGGCAATCTGGGAAATTGAGATGGAGTGGATAGTACTCCAAACAGGAATCTGGTGTGGCCAGAAGTCACTGTGATGCTGTGCTAAAACCCTTTCTTGGATGAGACCTTGAAGCCTCCTTCAGTAGAGTAGAGATAGGCTTCTGGGTACTTCTACATTCTGCACCGGCCACCAGCCTGGACTGTGTGACATCTCTCCCTAATCCCTTCCCAGAGCAAGCATACTTTAGAGTCACTAAGAAATTACTTCAGAAGATGTCCAAAGTCCTCCCTTTTCCTCTTCTATTATTTTTAG
Seq C2 exon
GGAACCCTGGAAGATCAGATCATCCAGGCCAATCCCCTCCTGGAGGCTTTTGGAAACGCCAAGACTGTGAGGAATGACAACTCCTCGAGATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025337:ENSBTAT00000035550:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.289 A=NA C2=0.097
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAATCTGGAGCTGGGAA
R:
CGAGGAGTTGTCATTCCTCACA
Band lengths:
199-1191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]