HsaINT1024085 @ hg38
Intron Retention
Gene
ENSG00000006788 | MYH13
Description
myosin heavy chain 13 [Source:HGNC Symbol;Acc:HGNC:7571]
Coordinates
chr17:10357735-10360071:-
Coord C1 exon
chr17:10359960-10360071
Coord A exon
chr17:10357828-10359959
Coord C2 exon
chr17:10357735-10357827
Length
2132 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTCTTCTTGTTTATTATTAGGGA
3' ss Score
8.65
Exon sequences
Seq C1 exon
CGGAGAATCCGGGGCTGGGAAGACTGTGAACACCAAGCGTGTCATCCAGTATTTTGCAACAATTGCAGTTACCGGGGACAAGAAGAAGGAGACACAGCCAGGCAAAATGCAG
Seq A exon
GTGAGCAGCCCCACCTGCATCCGGAGGCTTACTGGAATAAGTATACTTTAAAGCGTGGATGAGCACCAAGTGTATGCAGGGTATGCGCTCAGTAGAAACGGCAAATAGGAAAAATTCTTTCTTTCCTCTCTGTATCCTCACACAGAACGTGTCTGCCATCAAATGTATGGGGTTTTTCCATGCCAAACAATTCTCTAATTCTCTGCAGACACCAACTGGGTGTCCTACAATTCAATTCAATTCTGATACTAACTACCTAGAGAAAGCATCAAATCACACAAGTTAAGGGCTCAGTCCTGCAAAACTGACCCCACTTTGGATACCAGGGACCAGTCCGGGCCTCCTGAACTTCTAAGCAAGCAGCTATTAATTGGGAGGAGCTCACGACCCCCGTCTCAGGTTTGGTAATTACCTAGAGTGCTTCACAGAACTCAGAGAAACACTTTGCTTACATTTGCCAGTTTGTTATAAAGGCTGTTACAAAGGATGCAGAGGAAAAGCCAAGTGGAAAAGATGTCTAGGGCAAGGTATGGGGGAGGGGCAGGGTCTCTGCAGGTGACATCCTCCCAGTACCTCTAGGTGTTCATCAACCTGGAACCTCTCTGAAGCCTTCTGTGTAGGGTTTTTATAGAGGTTGCATTACATGAGCATGATTAATTAAATCACTGGCCATTGATGATTGACTCAACCTCCAGCCCTTCTTTCCTTCCCAGGGGTCAGGAATAGGGCTGAAAGTTCCAACTCTCTAATCACGCGGTTGGTTCCCTGGCAGCCAGCCCCCATCCTGAGCTGTCCAGGACCCCGAAGCCACCAATCATCTCATTAGCACACAAAAAGACATTTATCACTTCAGATATTCCAAGGGTTTTAGGAGCTGCGTACCAGGAAACTGGAAAAAGACCAAAATATACCATTCCTATTACATCACAGTATCACATGGAGCAAAGCAGGAAGTGGTTCCACCAGAATGGACTTGAGTTCTAGCACCAGCTCCATCACCTACAGTTGAGGGACCTTGACCAACTCCACATCCTCCTCTGGAGAAGGAATGTTTACACCAGTGGTTTTCAAACTGGAGTACACATCAGAATCAACAGGAGAGATTCTTAACAAAGGGCGGCAGAACCCAGGCCCAGAATTCCTGATTGTGTAGATCTAGGGTGGGACCTCATAGTTTGCATCTTTTTTTCCTTTTTATTTTGGAGAGACAGGGTCTCACTCTGTCACCCAGGCTGGAGTACAGTGGCACACCATCATAGCTCACTGTGACTTCAAACTCCTGGGCTCAAGCGATCATCCTTCAGCCTTCCAAGTAGCTAAGACTACAGGAACCACCATGCCTGGCTAGTTTTTTTTTAATTTTTTGTAGAGATGGAGTCTCACTATCTTTCCTAGGCTGGTATCAGACCGTTGGCCTCAAGTAATCCTCCTGCCTCAGCCTTCCAAAGTGCTAATTACGAGTGTGAACTACCATACCTGGCATTTCTCATATATTCCCAGGTAGTGTTCATGCTGCTGGTCCAGGGACCACACTTTGAGAACCACTAGGTTTGACAGTAGTTTCTAAATTGCTCTGGACCCAGAAGGATAAAGCAGTCATGGAGGTGAAGGTGAAAACTCTGCTTTCTGTAGTGGATTTCTGAATAATCATTCTCATAAGTTTTTGCTACATAAAAAACCTTTTTGAGAACCACTGTTGTTATTGTATCATCCCCTGGGTCGCTTGCTTTGCTCACATTCTATTTCTCCTTCTGAAGACAAATATCTATATTAGGTGGGTCATATTACATGCAATAACAGAGGTGCATGTTATAAAAATCCATGATTTATAATGAAATGTTATCAGAAAGGCAGTCTGGATGTTCTGATGGAGGGAGTAATATTCCTGCCTAGAACCTGGCATGACCAGAAGTCACTTCAATGCTATGCTAATAAGAACCTGTCTAAGATGGTACCTTGAAGACGCCTCAGGTCTGGTGGGGGTGGGGGCGTGGGTGCTGCACTGACCACCAGGTGGAGCTGGTCGACATCTCTACCTGAACCTGCCCAGAGTACCCACCGTTTTAGTCATCAAGGGGCTACTTTAGAAAACCATCCAAAGTCCTCTTTTTCCTCTTCTTGTTTATTATTAG
Seq C2 exon
GGAACCCTAGAGGATCAGATCATCCAGGCCAACCCACTGCTGGAGGCCTTTGGAAATGCCAAGACTGTGAGGAATGACAACTCCTCAAGATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006788:ENST00000252172:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.289 A=NA C2=0.065
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains