HsaINT0107653 @ hg19
Intron Retention
Gene
ENSG00000144821 | MYH15
Description
myosin, heavy chain 15 [Source:HGNC Symbol;Acc:31073]
Coordinates
chr3:108117484-108118114:-
Coord C1 exon
chr3:108117922-108118114
Coord A exon
chr3:108117688-108117921
Coord C2 exon
chr3:108117484-108117687
Length
234 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
ACCCATCTTTTCTCTCCCAGGAC
3' ss Score
11.15
Exon sequences
Seq C1 exon
GAGGAAGCAGCAGTGTACCATTGACTCCCTGCAGTCTAGTCTGGATTCTGAAGCTAAGAGCAGAATTGAGGTTACCCGGCTGAAGAAGAAGATGGAAGAGGACCTCAATGAGATGGAACTCCAGCTTAGCTGTGCCAACCGGCAGGTGTCAGAAGCAACCAAATCCCTGGGCCAGCTTCAGATTCAAATCAAG
Seq A exon
GTATTTTAAAACTGTAAGATGGGGTAGGGAGGGGTGGAAAATGTTTCTGCTTATGGAAGCAAACTAAGCAACAGATTGTGTTCAGCAGTAAAGATGAGGACAACAAATCTAATCTTTCCAGAGAGAAGGAGCATGCTTATGTCTAAATATATAGTCAGATCATGCATGTGTAGGTGCATAGTCTATGTTGAACTCAGAGGGATCTGTACTCCAGACCCATCTTTTCTCTCCCAG
Seq C2 exon
GACCTTCAAATGCAGCTGGATGACAGCACACAACTGAACAGTGATCTGAAGGAGCAGGTGGCTGTGGCTGAGCGGCGCAACTCTCTTCTTCAGTCTGAACTAGAGGATCTAAGGTCCCTGCAAGAGCAGACAGAGCGTGGCCGCAGGCTGTCAGAAGAAGAGCTCCTGGAAGCAACAGAAAGAATCAATCTTTTCTATACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144821-MYH15:NM_014981:35
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.169 A=NA C2=0.426
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGTTACCCGGCTGAAGAA
R:
TCTGTTGCTTCCAGGAGCTCT
Band lengths:
306-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)