GgaINT0119204 @ galGal3
Intron Retention
Gene
ENSGALG00000015358 | Q91377_CHICK
Description
NA
Coordinates
chr1:90782638-90783698:-
Coord C1 exon
chr1:90783506-90783698
Coord A exon
chr1:90782842-90783505
Coord C2 exon
chr1:90782638-90782841
Length
664 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTC
5' ss Score
7.46
3' ss Seq
ACCTGGTTGCTTTGTTCTAGGAG
3' ss Score
9.72
Exon sequences
Seq C1 exon
GAGGAACCAACAACGCACCATAGATTCTCTGCAGTCCACCCTTGATTCTGAAGCCCGGAGCAGAAATGAGGCCATCCGGCTGAAGAAGAAGATGGAAGGAGACCTCAACGAGATGGAAATCCAGCTCAGCCATGCTAACAGGCATGCTGCAGAAGCAACCAAGTCAGCACGTGGCCTGCAGACACAAATCAAG
Seq A exon
GTACTCTGAGGGCTGGGTTTCATACCAAAACAGTAATGGTGATGGTGATCAAGAGAGAAGCTACTCTCAAGGACATGCAGTAAAGCCCTTATGATCACATCTGATATGAGAGAATACTGAGCAGTAGATTTCTTCCGAGACTTGCAGACAATGTGGGTGAGATCCAGGCATGAAACACTGCTGGCTACAGCTTCCCACAGGGGCAGAGAGCTACAGCGTGAGGCACTGAAAAGTTGTGATTTCCTTGAGAGCCTGCAAATCCTTTAAAATTGGAGAATAAATCAGTTGACTGGAGTACAGGGAGTGTGCGTGTATGTTCAGCTTTGTCACCCACTTCAGTGTTGGTATTTTTTTGTTTTAAAAACCTGTGCTAAGAGATCTCTTAAATCATTACCTGCCTCTTGTCCCTCCTGTGCCCATGCTGCCAGTTCTGCCTCAGGCAGAAGTGCCAGCTCTGACAGACCTCAGCTCAGGTTTTTTCCCCCCTTCCACCACGTACCATAAAAGCTCTTGAGATAACAATCTAGAGGAAGCTTTTCTCCAGAAAAGAAACGCTGAACCTTTGGAGGTGGCCCAGGGAATCTCTGCAATCCATGGGTCCTTAGATAAGCACAGGGGCTCAAAATTGAGTTGGCCTGGTAAAAACCTGGTTGCTTTGTTCTAG
Seq C2 exon
GAGCTCCAGGTGCAGCTGGATGACTTGGGACACCTGAATGAAGACTTGAAGGAGCAGCTGGCAGTCTCTGACAGGAGGAACAACCTTCTCCAGTCAGAGCTGGATGAGCTGAGGGCTTTGCTGGACCAGACTGAACGGGCGAGGAAGCTGGCTGAGCATGAGCTACTGGAAGCCACCGAACGTGTGAACCTGCTGCATACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358:ENSGALT00000036887:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.846 A=NA C2=0.441
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.8=100),PF0003816=Filament=PU(18.7=73.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCCTTGATTCTGAAGCCC
R:
GTATGCAGCAGGTTCACACGT
Band lengths:
358-1022
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]