RnoINT0096451 @ rn6
Intron Retention
Gene
ENSRNOG00000061038 | Myh15
Description
myosin, heavy chain 15 [Source:RGD Symbol;Acc:1565858]
Coordinates
chr11:54226665-54227946:-
Coord C1 exon
chr11:54227754-54227946
Coord A exon
chr11:54226809-54227753
Coord C2 exon
chr11:54226665-54226808
Length
945 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTT
5' ss Score
8.4
3' ss Seq
GCCATGTTTTTCTTTTGCAGGAC
3' ss Score
12.17
Exon sequences
Seq C1 exon
GGAGAAGCATCAGCAGGCTCTGGGTTCCCTGCAGTCTAGTCTGGATTCTGAAGCTTCAAGCAGAATTGAGGCAACTAAGATGAGGAAGAAGATCGAAGGGGACCTCAAGGAGATGGAGATTCAGCTTTGTACTGCCAACAGACAGGTGTCACAAACGACCAGAGCCTTAGGCCAGCTTCAGAGTCAAATGAAG
Seq A exon
GTACTTTCAAACAACACTGAAGAACAGACACATGCAGAAACTAAGTGACAGAATCTGTTGAGCAGTGAAAGAAAAAACCATTTCACCCTTCCAGAAAGCTAGAGCAGGCTTACACTGAACATAGGTGAAGCAGAATCATGAATGCACAGGGACACATCCGATTTTGTGAGCAGGCCATTAAATAGGAAAAAAGAATGGACAGTCTTGGCAGTCATCTGCTTCCAAGACACTATTTGAGGTATATCAGAATGACAGTTCAATTCGGAGCCTCCTCTTGGTGGACACAGTAGGTTGGGTAGCATTATTTGAGGCCAACAGCAGGGGCTTTTTTGTCAAACAGACTTCCTTGAAAGTAAATTCTCTCCTGCACTAAAGAAGATTGTGTTTGTATAACCTAAGGTCCAGCATAAGCGAACAGTCTAGAAGAAATACCATAGAAGTTAAGGGCAGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGTGCAAGGCCCTGGGTTCAGTCCCCAGCTCCGGAAAAAAAAAAGAACCAAAAAAAAAAAAAGAAGAAGTTAAGGGCAAACTAAGGAGAAATAACTGACTCCTTAGTGAACCATTGCCAATACATATCCCCAGAGCTCTACCTCTCAGGTCAGTTGCTTGCATACTCTGCTGATCCTGCCTGCTCTCTGACTTCTAACACAGAGAGTTTAGCTTCTTGGCTTTCTCTATATCCCAGTCCTACTGGCAGCTGCTGAGAGCAACAGCTTTCTGCCCTGTTGCTCAAGACACTTTGATTTCAGTAAACTATCCTAGAGCTGCCTCTTGGGGTCACTTAGAAACCTTCTATCTATGTGATCAAGAACTCGGAAACTTGTCTTTGTCTGGTGGTCCCCCTGCCATGCTAACAGTTGAACTCGAAGGTATCCATGCCAGGGCCATGTTTTTCTTTTGCAG
Seq C2 exon
GACCTTCAACAACACCTGGATGACAGCATTTACCAGAACAAAGACCTGAAGGACCAGGTGGCTCTGGCTGAGCAGCGCAACATTCTCCTTCAGTCTGAACTTGAAGAGCTGAGGTCCTTGCAAGAGCAGACAGAGCGCGGGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061038:ENSRNOT00000090307:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.646 A=NA C2=0.354
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(5.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGCATCAGCAGGCTCTG
R:
TCTCCCGCGCTCTGTCTG
Band lengths:
336-1281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]