BtaINT0097248 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018399 | MYH15
Description
myosin, heavy chain 15 [Source:HGNC Symbol;Acc:HGNC:31073]
Coordinates
chr1:53547487-53548145:-
Coord C1 exon
chr1:53547953-53548145
Coord A exon
chr1:53547691-53547952
Coord C2 exon
chr1:53547487-53547690
Length
262 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
GCCTAAGTTTTCTCTCCCAGGAC
3' ss Score
8.25
Exon sequences
Seq C1 exon
GAAGAAGCAGCAGTGTGCTATTGACTCCCTGCAGTCGAGTCTGGATTCCGAAGCTCGTTGCAGAATTGAGGCCACCCGGCTGAAGAGGAGTATGGAAGGGGACCTCACTGAGATGGAGCTCCAGCTTAGCTGTGCCAGCAGGCAGGCATCAGAGGCCACCAAGTCCCTGGGCCAGCTCCAGACCCAGGTCAAG
Seq A exon
GTATTTTCAATTGTCACATGGGGATGAAGCAGGGACGCCTCTGCTTATGGGAACAAGCCAAGTAACAGGTTGTGTTCAACAATAAAAGTGAGGACACCAAATCTAGTCCCTCAGGAGACCTTACATTCAATTGGCTTACATTAATATGTGCTTATGATTAACTGGTTTATGTTATGTTTAACTTTGTTGAGTGTGCACACACAAACTCAGGTCCCATTGGACTCCCAGGGACCCATGCCCAGGCCTAAGTTTTCTCTCCCAG
Seq C2 exon
GACCTGCAGGTGCAGGTGGATGACAGCACATGCATGAACAGCGAGCTGAAGGAGCAGGTGGCGGTGGCCGAGCGGCGCAATGCTCTTCTCCAGGCTGAAGTCGAGGAGCTAAGGTCCTTGCAGGAGCAGACAGAGCGCAGTCGCAGGCTGGCAGAGGAGGAGCTCCTGGAAGCCACGGAAAAAATCAATCTTTTCCATGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018399:ENSBTAT00000032372:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=NA C2=0.279
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.8=100),PF0003816=Filament=PU(19.8=77.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGCTGAAGAGGAGTATGGA
R:
TTTTTCCGTGGCTTCCAGGAG
Band lengths:
301-563
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development