HsaINT0107844 @ hg38
Intron Retention
Gene
ENSG00000092054 | MYH7
Description
myosin heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:7577]
Coordinates
chr14:23426777-23427307:-
Coord C1 exon
chr14:23427240-23427307
Coord A exon
chr14:23426865-23427239
Coord C2 exon
chr14:23426777-23426864
Length
375 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
TATTGCATTTTTGGCCACAGGAA
3' ss Score
8.38
Exon sequences
Seq C1 exon
CTATTGAGAAGGGCAAAGGCAAGGCCAAGAAAGGCTCGTCCTTTCAGACTGTGTCAGCTCTGCACAGG
Seq A exon
GTGAGTGGGACACAGCCCCAGCCAACTTGGCTCCCCATCTGCCCAACCCCACCCAGCCCCACCCTTCCCTGCCTTGTTCATCCCCTACTCCTCCCGTTCCCTGTCTCCTTGGTGCATTCGGGACCATTTTCACTCTGTCTTCTCTTCCCGTCATCTCCTGGCCTCTTCACTTATTTACTTCCCATCTCCCTTCTCTCCTCTTTCCCTTCTGTCTCCCACCCTCTCTCCTTATCCCTGTCTGCCCCCAGGGCCCCTTCATCTCTGTGACTTCTCGAATTCTCTCCATCTCTCTTTTCCTTCCTTCTTCTCCTCTCTTCTTCCTGCATCTCTTTCTGGCATTTTCTTTACTTTTCTCTATTGCATTTTTGGCCACAG
Seq C2 exon
GAAAATCTGAACAAGCTGATGACCAACTTGCGCTCCACCCATCCCCACTTTGTACGTTGTATCATCCCTAATGAGACAAAGTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092054:ENST00000355349:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=NA C2=0.033
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development