RnoINT0096529 @ rn6
Intron Retention
Gene
ENSRNOG00000016983 | Myh7
Description
myosin heavy chain 7 [Source:RGD Symbol;Acc:62030]
Coordinates
chr15:33650084-33650535:-
Coord C1 exon
chr15:33650468-33650535
Coord A exon
chr15:33650172-33650467
Coord C2 exon
chr15:33650084-33650171
Length
296 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
GTCCTCTTTTTCTGCCACAGGAA
3' ss Score
11.05
Exon sequences
Seq C1 exon
CTGTAGACAAGGGCAAAGGCAAAGCAAAGAAAGGCTCATCCTTTCAGACCGTGTCCGCACTGCACAGG
Seq A exon
GTGAGCGTGTGCCCAGCTCCAGCCTACCGTGGCTTCCCATTCATTCTGGTGCCTCAGCCCCAGCTCCTCCCAACACCAGTTCTTCTGGGTTTACCCTAGCCCTTTGCATGCTCCTGTCTGTCTTCCCCTCCTGACCTCATCTCACCCCTCTTCACTTCTCACCTTCATCAACCTCTCCCTTCTCCAGCATCCTTTCGTCTCCTCGCTTCCTGTATTCTCTCCTTTCTTTCCCTCCTCTTCATTTCCTGCTTCTCCTTCATCCATGCTCTTTATTTTGTCCTCTTTTTCTGCCACAG
Seq C2 exon
GAAAATCTGAACAAACTTATGACAAACCTGCGCTCCACGCACCCTCACTTTGTACGCTGCATCATCCCCAATGAGACGAAGTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016983:ENSRNOT00000024186:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.391 A=NA C2=0.033
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTAGACAAGGGCAAAGGCA
R:
TTCGTCTCATTGGGGATGATGC
Band lengths:
148-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]