HsaINT0107844 @ hg19
Intron Retention
Gene
ENSG00000092054 | MYH7
Description
myosin, heavy chain 7, cardiac muscle, beta [Source:HGNC Symbol;Acc:7577]
Coordinates
chr14:23895986-23896516:-
Coord C1 exon
chr14:23896449-23896516
Coord A exon
chr14:23896074-23896448
Coord C2 exon
chr14:23895986-23896073
Length
375 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
TATTGCATTTTTGGCCACAGGAA
3' ss Score
8.38
Exon sequences
Seq C1 exon
CTATTGAGAAGGGCAAAGGCAAGGCCAAGAAAGGCTCGTCCTTTCAGACTGTGTCAGCTCTGCACAGG
Seq A exon
GTGAGTGGGACACAGCCCCAGCCAACTTGGCTCCCCATCTGCCCAACCCCACCCAGCCCCACCCTTCCCTGCCTTGTTCATCCCCTACTCCTCCCGTTCCCTGTCTCCTTGGTGCATTCGGGACCATTTTCACTCTGTCTTCTCTTCCCGTCATCTCCTGGCCTCTTCACTTATTTACTTCCCATCTCCCTTCTCTCCTCTTTCCCTTCTGTCTCCCACCCTCTCTCCTTATCCCTGTCTGCCCCCAGGGCCCCTTCATCTCTGTGACTTCTCGAATTCTCTCCATCTCTCTTTTCCTTCCTTCTTCTCCTCTCTTCTTCCTGCATCTCTTTCTGGCATTTTCTTTACTTTTCTCTATTGCATTTTTGGCCACAG
Seq C2 exon
GAAAATCTGAACAAGCTGATGACCAACTTGCGCTCCACCCATCCCCACTTTGTACGTTGTATCATCCCTAATGAGACAAAGTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092054-MYH7:NM_000257:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=NA C2=0.033
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)