BtaINT0097306 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009703 | MYH7
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MM07]
Coordinates
chr10:21331792-21332277:+
Coord C1 exon
chr10:21331792-21331859
Coord A exon
chr10:21331860-21332189
Coord C2 exon
chr10:21332190-21332277
Length
330 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
TCTTGGGTTCTGGGCCACAGGAG
3' ss Score
5.44
Exon sequences
Seq C1 exon
CTATTGAGAAGGGCAAAGGCAAGGCCAAGAAAGGCTCATCCTTTCAGACTGTGTCAGCTCTGCACAGG
Seq A exon
GTGAGTGTGTGATCAGCGCCACCCCAGCCCTGCTTGTCCCCTGCTTGGCTCAGCCCTGACTCCTCCCACTCAGTCTTCTCAGGCCCTTCCTGACCGTCTGCGCCCTGTCTTCTCTCCCCTGTATCTGCTGGCCTCGGCTCTTGCTCCTTTCTCATCTCCCCTGGCTTCTTTATCCCTTCCGCCTCCCACTATCTCCTCCTCTGTGTCTTACCCTAGCCCTCCTTCACTCTCCAGCTCCTTGCCTTCTCTCTTTCCCTTCCTTCCCCTCTGCTCCCTTTCTTACTTCTCTTTCACTTTCTTAACTTCTCCCTCTTGGGTTCTGGGCCACAG
Seq C2 exon
GAGAATCTGAACAAGCTGATGACCAACTTGCGCTCCACACACCCCCACTTCGTGCGGTGCATCATCCCCAATGAGACAAAGTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009703:ENSBTAT00000061306:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development