HsaINT0108440 @ hg19
Intron Retention
Gene
ENSG00000141140 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:26234]
Coordinates
chr17:34862802-34863351:-
Coord C1 exon
chr17:34863238-34863351
Coord A exon
chr17:34862979-34863237
Coord C2 exon
chr17:34862802-34862978
Length
259 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGG
5' ss Score
4.41
3' ss Seq
CCCCTGTTCCCATCCCACAGGAA
3' ss Score
11.9
Exon sequences
Seq C1 exon
GAGGAATACGCAGTTGAGGGCCTGGAGTGGTCATTCATCAACTACCAGGACAACCAGCCCTGTTTGGATCTCATTGAGGGAAGCCCCATCAGCATCTGCTCCCTCATAAATGAG
Seq A exon
GTGGGGAGGTCAGCTAATGAGCCGAGCACCAGAGTTGGCCTTTGGGTTTTCTGGGGCCTTGATGATTATCCTGTTTCCTCTCTGTGCCTCTCTCCTCCCAGTCTGCCAAATAGATCTGCTAATTGCTATATTTTTTCTGTTGGGGACACTATGATGCCTGTGTGATGTCTGCTGTCATGGGGTCCACAGGGTGGGGACAGTGAGGGTTGTGGTGAGACACTCTCATGTTGGTGGCTGACCCCCTGTTCCCATCCCACAG
Seq C2 exon
GAATGCCGCCTCAATCGACCCAGCAGCGCAGCCCAGCTCCAGACACGCATTGAGACTGCCCTGGCAGGCAGCCCCTGCCTGGGCCACAATAAGCTCAGCCGGGAGCCCAGCTTCATTGTGGTGCATTATGCGGGGCCTGTGCGGTACCACACAGCAGGCCTGGTGGAGAAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141140-MYO19:NM_001163735:17
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.070
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(8.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAATACGCAGTTGAGGGC
R:
CTTGTTCTTCTCCACCAGGCC
Band lengths:
291-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)