GgaINT0130572 @ galGal4
Intron Retention
Gene
ENSGALG00000005374 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:8133357-8133829:-
Coord C1 exon
chr19:8133716-8133829
Coord A exon
chr19:8133534-8133715
Coord C2 exon
chr19:8133357-8133533
Length
182 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
TTGTTTTGTTTGTTACGCAGGAA
3' ss Score
8.19
Exon sequences
Seq C1 exon
GAAGAATATGCATCTGAAGGTTTACAGTGGTCTTTCATAAACTACCAGGACAACCAGAGCTGCCTTGACCTGATAGAGGGCAATCCTCTCAGCATTTTTTCTCTGCTGAATGAG
Seq A exon
GTAAGCGCACACCTAAGCTGCGAGTCTTTCTGGCCTAGCTGCACACCTTCCATTCCAAGCCAGCAAAGAGAACACAAATGCTGAATTAGAATGAAACTTGCCAGATATTGCTTTTAATTACTAAAAGACATCTGCTTAGGACAAATACAAGATGCTGCAATTTTGTTTTGTTTGTTACGCAG
Seq C2 exon
GAATGCCGTTTGAATAGATCCTCCAACCCTGACCTGTTTCAAACTCGGATTGAAAAAGCTTTGTCTGATAATCAATGTTTGAGTCGAGACAAGTTTAGTAAGAAGCCTAACTTCATTATTTCACATTATGCTGGCAAAGTCTGCTATCAGCTGGCAGCAATGGTGGAGAAAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005374:ENSGALT00000039165:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(8.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACCAGGACAACCAGAGCT
R:
TTTCTCCACCATTGCTGCCAG
Band lengths:
245-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]