BtaINT0097861 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012675 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:13167473-13167969:-
Coord C1 exon
chr19:13167856-13167969
Coord A exon
chr19:13167650-13167855
Coord C2 exon
chr19:13167473-13167649
Length
206 bp
Sequences
Splice sites
5' ss Seq
GAGGTTGGA
5' ss Score
2.95
3' ss Seq
TGACTGCCCGCCCCACACAGGAG
3' ss Score
6.92
Exon sequences
Seq C1 exon
GAGGAGTATGCAATGGAGGGCCTGGCGTGGTCGTTTGTCAGCTACCAGGACAACCAGCCCTGCTTGGATCTCATCGAGGGGAGCCCCGTCAGCATCTGCTCCCTCATAAACGAG
Seq A exon
GTTGGAGGGTCGCTGGCCTGCGGAGCCCCCAGGGCGGGGCTTTGGGCTTTTCCCGGGACCTCGAGGCCCACCCTGCGCCTCTTTCTCTCTGTCTGCTTAGTGGGTTCGCCTGCCCTGTGAGCCCTCTGTCACAGGGGTGCCATGATGCTCCCATGGGTGGGTTCCCGTGCCCCTCTGCCCTGTGGCTGACTGCCCGCCCCACACAG
Seq C2 exon
GAGTGCCGCCTTAATCGGCCAAGCAGCGCAGCCCAGCTCCAGACGCGCATCGAGAGCGCCCTGACCGGCCACCCCCGCCTGGGGCGCGACAGGCTGAGCCCGGAGCCCAGCTTCATTGTGCTGCATTACGCGGGGCCCGTGCGGTACCGCACCGCGGGCCTGGTGGAGAAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012675:ENSBTAT00000064679:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.220
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(9.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTATGCAATGGAGGGCCTG
R:
CTTGTTCTTCTCCACCAGGCC
Band lengths:
288-494
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]