RnoINT0096960 @ rn6
Intron Retention
Gene
ENSRNOG00000002852 | Myo19
Description
myosin XIX [Source:RGD Symbol;Acc:1559961]
Coordinates
chr10:72217555-72218099:+
Coord C1 exon
chr10:72217555-72217668
Coord A exon
chr10:72217669-72217922
Coord C2 exon
chr10:72217923-72218099
Length
254 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TGCCCACTCCCATCCTATAGGAA
3' ss Score
9.93
Exon sequences
Seq C1 exon
GAGGAATATGAAGTTGAGGGCCTGGAGTGGTCATTTGTCAACTACCAGGACAACCAGACCTGTTTAGATCTCCTCGAAGGGAGCCCCATCAGCATCTGTTCCCTCATAAATGAG
Seq A exon
GTAAGGAGGTTAAGCCAGTGAGCCAAGCAACAGAGTTAGACTCTTGGCTTTTCTGGTGCCTTGGTGATTATTTTGTGTGCTCTTTTGTCCATCTCTCTCCCCCATCTACAAATTATTGTGCTAATCCCTGTGCTTTCCCTGGAGTTGCTATAATGCTTGTGTTACAACTCTGCTACCATGGGTCCAGACACCAAGGATGCTGAAGGTGTGGGAAGACCTCATCATTGTGATGCTTGCCCACTCCCATCCTATAG
Seq C2 exon
GAATGCCGCCTTAACCGTCCGAGCAGTGCAGCACAACTACAGACACGCATTGAGAGCACGCTGGCAGGCAGGCCCTGCCTGGGCCATAACAAGCTCAGCCGGGAGCCCAGCTTTGTGGTGATGCATTTCGCAGGACCTGTACGGTACTGCACAGCGGGCCTAGTGGAAAAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002852:ENSRNOT00000003886:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(8.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGAAGTTGAGGGCCTGGAGT
R:
TTGTTCTTTTCCACTAGGCCCG
Band lengths:
284-538
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]