MmuINT0104089 @ mm10
Intron Retention
Gene
ENSMUSG00000020527 | Myo19
Description
myosin XIX [Source:MGI Symbol;Acc:MGI:1913446]
Coordinates
chr11:84900474-84901018:+
Coord C1 exon
chr11:84900474-84900587
Coord A exon
chr11:84900588-84900841
Coord C2 exon
chr11:84900842-84901018
Length
254 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TGCCCACTCCCATCCCACAGGAA
3' ss Score
10.85
Exon sequences
Seq C1 exon
GAGGAGTACGAAGTTGAGGGCCTGGAGTGGTCATTTGTCAACTACCAGGACAACCAGACCTGCTTAGATCTCCTTGAAGGGAGCCCCATCAGCATCTGTTCCCTCATAAATGAG
Seq A exon
GTAAGGCGCTTAGGCCAGTGAGCCGGCCAACAGAGCCGGTCTCTGGGCTTTTCTGGTGCCTTGGTGATTCTTTTGTGTGCTCTTTTGTCCGCCTCTCTCCCCCATCTACAAATAAGTGTGCTAATCCCCGGGCTCTCCCTGGAGTTGCTATAATGCTTGTGTTACAACTCTGCTACCGTGGGTCCAGACACTGAGGATGCTGCACGTGTGGGAAGTCCTCATCACTGTGATGACTGCCCACTCCCATCCCACAG
Seq C2 exon
GAATGCCGCCTTAACCGGCCAAGCAGTGCAGCACAACTACAGACGCGCATCGAGAGCACGCTGGCAGGACGGCCCTGCCTGGGCCATAACAAGCTCAGCCGGGAGCCCAGCTTCGTGGTTGTGCATTTCGCGGGACCTGTACGGTACCACACAGCCGGCCTGGTGGAAAAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020527:ENSMUST00000093969:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.119
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(8.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGAAGTTGAGGGCCTGGAG
R:
TTGTTCTTTTCCACCAGGCCG
Band lengths:
284-538
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types