HsaINT0108988 @ hg19
Intron Retention
Gene
ENSG00000169994 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:7607]
Coordinates
chr2:128394120-128394488:+
Coord C1 exon
chr2:128394120-128394203
Coord A exon
chr2:128394204-128394368
Coord C2 exon
chr2:128394369-128394488
Length
165 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGCT
5' ss Score
6.77
3' ss Seq
CCCACCCTCTCTGCCCCCAGGAC
3' ss Score
12.91
Exon sequences
Seq C1 exon
CAAACCTCGGAGCCTTCCTACCCGGACGTCATCCTCATCGCCATCAACCGACATGGGGTTCTGCTCATCCACCCCAAGACCAAG
Seq A exon
GTAGCTGCTGGGCCTCCGGAGGGGCTGGGGGCCACCAGGTCCAGGGACCTGTGCAGGTGGGGCTGCAGTCATCTCTGCGGTGTGTCCTGCCTCTCTCCTGTCCCCTAACACACACAGAGCCCGTGCTCTGGAGGCGTCCGGCCCACCCACCCTCTCTGCCCCCAG
Seq C2 exon
GACCTGCTCACCACCTATCCCTTCACCAAGATCTCCAGCTGGAGCAGCGGCAGCACCTACTTCCACATGGCGCTGGGGAGCCTGGGCCGTGGCAGCCGCCTGCTGTGCGAGACCTCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169994-MYO7B:NM_001080527:45
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCTCGGAGCCTTCCTACC
R:
AGGGAGGTCTCGCACAGC
Band lengths:
202-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)