HsaINT0108988 @ hg38
Intron Retention
Gene
ENSG00000169994 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:127636545-127636913:+
Coord C1 exon
chr2:127636545-127636628
Coord A exon
chr2:127636629-127636793
Coord C2 exon
chr2:127636794-127636913
Length
165 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGCT
5' ss Score
6.77
3' ss Seq
CCCACCCTCTCTGCCCCCAGGAC
3' ss Score
12.91
Exon sequences
Seq C1 exon
CAAACCTCGGAGCCTTCCTACCCGGACGTCATCCTCATCGCCATCAACCGACATGGGGTTCTGCTCATCCACCCCAAGACCAAG
Seq A exon
GTAGCTGCTGGGCCTCCGGAGGGGCTGGGGGCCACCAGGTCCAGGGACCTGTGCAGGTGGGGCTGCAGTCATCTCTGCGGTGTGTCCTGCCTCTCTCCTGTCCCCTAACACACACAGAGCCCGTGCTCTGGAGGCGTCCGGCCCACCCACCCTCTCTGCCCCCAG
Seq C2 exon
GACCTGCTCACCACCTATCCCTTCACCAAGATCTCCAGCTGGAGCAGCGGCAGCACCTACTTCCACATGGCGCTGGGGAGCCTGGGCCGTGGCAGCCGCCTGCTGTGCGAGACCTCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169994:ENST00000409816:44
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCTCGGAGCCTTCCTACC
R:
AGGGAGGTCTCGCACAGC
Band lengths:
202-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development