BtaINT0098351 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039803 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:4820525-4820902:-
Coord C1 exon
chr2:4820819-4820902
Coord A exon
chr2:4820645-4820818
Coord C2 exon
chr2:4820525-4820644
Length
174 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGCA
5' ss Score
6.28
3' ss Seq
CCCGCCTGCTGTGGCCACAGGAC
3' ss Score
8.28
Exon sequences
Seq C1 exon
CAAACCTCGGAGCCCTCCCACCCGGACATCATCCTCATCGCCATCAACCGGCACGGGGTCCTGCTCATCCACCCCAAGACCAAG
Seq A exon
GTAGCAGAGGGCCCTGGCAGGACCGGGGGGGCCCCGTGCAGGGGGGCTGGGTGCCCGTCCTCCTACACGTCGGCCCTGGGCTCTAGAGGATCCGGGGCAGCAGTGCAGCCCCAGGGCCCCTCAGACCTCCTGGGCTTGGGCTGGCTCTGACCCACCCGCCTGCTGTGGCCACAG
Seq C2 exon
GACCTGCTCACCACCTACCCCTTCACCAAGATCGCCAGCTGGAGCAGCGGCAGCACCTACTTCCACATGGTGCTGGGGGGGCTGGGCCGGGGCAGCCGCCTGCTGTGTGAGACCTCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039803:ENSBTAT00000061382:51
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCTCGGAGCCCTCCC
R:
AGAGAGGTCTCACACAGCAGG
Band lengths:
202-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]