DreINT0101057 @ danRer10
Intron Retention
Gene
ENSDARG00000099871 | myo7aa
Description
myosin VIIAa [Source:ZFIN;Acc:ZDB-GENE-020709-1]
Coordinates
chr18:3181016-3182301:+
Coord C1 exon
chr18:3181016-3181099
Coord A exon
chr18:3181100-3182181
Coord C2 exon
chr18:3182182-3182301
Length
1082 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
3' ss Seq
TATTTGTGTTTTCTCTGCAGGAC
3' ss Score
11.89
Exon sequences
Seq C1 exon
CAAACCACTGAGCCGCACTTCCCTGAGATCCTGCTGATCGCCATCAACAAATATGGAGTCAGTCTGATCGACCCCAAAAACAAG
Seq A exon
GTGTGCTACAAGTCCAGTTTCTATGTGTTTAAGCATGCTCTGATGTATATTCCAGTGTGATTTTAAAATACAACACGTGTAGGTTTCTGCTAAATTCATTCTTCCATGGCGGGGCGCCAAGCCAAAACTCATCCCGCCACGGCTACATTGCAGTTTCTCATTCAAAACATTTTATTTTTTTAATAGCGGATAATAATCGCACTGAAATGTATTAAAAGGTAAGTGAATTATAATAGCGCAAACTTTTCTGTAACCGTACAAGTGCTGTGCGTCATTTGTTTACCCTTTAAGGTGACGTGCTGACTGACTGACAGGCGTGTGATGCGTGAGGCCAGCAAACACGACGTATAGCCGTTTCACTTTACTTCAGGACGCAATAATATCGCTCTGTAGGTCTATTAGAAACATTCATAAATATTCCTAGCAAAGCTAATAAATGCTGGAGACATTTCACACTTCAGCAGCATTTATTTGAGAGCGCACAAGAAGATCTGCGTGCTCTTGATGCGGCTTATATTTGAGGGGGCGTGCAAAAATTTTTGTGCACAAGCAGAGGAAATCGGCACGCAAGCAGAGATCCACATGCTGTAGGCTATTACATAAATGTGATCTCGACTTCTAATACTGCACTCACCACATTTGTCATTGAAATAATGCCGCAGGTATTTGGTAGAAAAAATGGAAAAAATCCTAGAGAAACAATGCGTGTGTATTTGTACTTTAGGAGTGCTGATTGACGCATTTTAACACTTTTATTTTTATTGCTCATTTCCCACAGGCAGATGTTCAGTTTTAAGGTCTGCAATTATAATACTTGCATTAATAGTTTGCATTCTGTTAAAACGTAATATTATTTAAATTAAAAACGTTAAATTATAGTACTATTTTAAAATCTGTATTGTTTTAGCATCAATGTACTATTTTATTGTTTACTATTTTTTTCGATCAATTTGTTGTGTAATATATTTCGATTTTTTTCACTATTTATAATATATTTTGATGGATATTATGATGTATGTTTATTAATTTATTTTTAAGTCATTTTATTTTTGTATGAAGTGATATTTGTGTTTTCTCTGCAG
Seq C2 exon
GACATTTTAACCACATATCCCTTCACCAAAATCTCCAACTGGAGCAGCGGCAACACGTACTTCCACATCACAATCGGCAACCTGGTTCAGGGTAGCAAACTCCTGTGTGAGACCTCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099871:ENSDART00000166980:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCACTGAGCCGCACTTC
R:
AGGTCTCACACAGGAGTTTGC
Band lengths:
198-1280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]