RnoINT0097406 @ rn6
Intron Retention
Gene
ENSRNOG00000013641 | Myo7a
Description
myosin VIIA [Source:RGD Symbol;Acc:628830]
Coordinates
chr1:163002434-163003450:-
Coord C1 exon
chr1:163003367-163003450
Coord A exon
chr1:163002554-163003366
Coord C2 exon
chr1:163002434-163002553
Length
813 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
GTGTCTACTTGCTCTCCTAGGAC
3' ss Score
9.78
Exon sequences
Seq C1 exon
CAAACGACAGAACCAAACTTCCCAGAGATTCTCTTAATTGCCATCAACAAGTATGGGATCAGCCTCATCGATCCCAGAACCAAG
Seq A exon
GTGAGCAGAGCAGGAGTGAGCAGGTGAGGACCAACCAAGGTCCCAGACATAGCCCTGTTATCTACTGTCCCCACTTCAGAGCCCCTGGATCCCCATCTTGAAAGGCTGCCTGTGCTTGCCACATTGACTCATTTGCCCTTTCAAAATCGCAACCTTCAACTGACCACCAAATTCTTGCTGCTAAGTTCCATAAAAGTCCTTTTAGCGCCCAGCATTTCAATGTCACTGGATACCACAGACCAACACCTCCTTCCAAAATGGTCTTTGACTATCTGGTCAGGATGGTAAGTGGTGGAGCACATGCAGGATACCTATGCTTACCGAAAGGCCAGTCCCACTATGAGGCCAGAAGCTGTGCTCCTGAATGATTGGTAGAAGTCACTAATGATTGTCTTCTTGCTGCATGAGATCATGGTCACATGGGCTCTCTGCCTTTCTTTGTCATTCTTAGACTTTTTTGGACTTCTACTCTACACAATCCAAGTATAATTGTGTCCTTCCAAGGCTCTTCTCTGTCCCATTTTTCTCTTTAAACTCACCCATTGAGACCCACAGTCGTTAGTGCTCTCAGGCACTCATTTCTATATTTGGTCCCAAGTATACGACAACCTCCAAGGCTTCCTTGGACAAGGCAAGGCATGGAGGGGAAGGGACCTGCTCCCTGGCAACTCCACACAGAGCTGGCCTCTCCCTCGAGTTCCTTTCCTCGTGTGAGGGCCCAGACTTTCTTTGAGGGGTATCTGCAGACTGGAGCTGGGGTTACTGAAGCCATGGGGTCATGCTGTGTACCTGTGTGTCTACTTGCTCTCCTAG
Seq C2 exon
GACATCTTGACTACTCACCCCTTCACCAAGATCTCCAACTGGAGTAGTGGCAACACCTACTTCCACATCACCATTGGGAACTTGGTCCGTGGGAGCAAACTGCTCTGTGAGACATCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013641:ENSRNOT00000019053:47
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGACAGAACCAAACTTCCCA
R:
TGATGTCTCACAGAGCAGTTTGC
Band lengths:
198-1011
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]