BtaINT0098301 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57412113-57413201:+
Coord C1 exon
chr15:57412113-57412196
Coord A exon
chr15:57412197-57413081
Coord C2 exon
chr15:57413082-57413201
Length
885 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
GATTCTCTCTGCTCCCCTAGGAC
3' ss Score
10.46
Exon sequences
Seq C1 exon
CAAACTACAGAGCCAAACTTTCCTGAGATCCTCTTAATTGCCATCAACAAGTATGGGGTCAGCCTCATTGATCCGAGAACCAAG
Seq A exon
GTGAGCAGTGACAGGGAAGAGCAGGTAAGGGGGGATTTTCTGTCTGTATTTCTAACAAAGGACACCAGAACCAAACTTCAAGACACTCTGTCAGCTACCAATATCCTCACTTCCTCTACCCTCCTGGCCACATGTCCTGAGAGGCTGTCCATGTTTCCTGTGTCTACTTCCTTACCTCTCATCTCTCCATCAAAAGTGCTCTCTGAGTTACTAACGAAGTCCTCACTATGAAATCCATTCAACTCTTTAGTGCTTGGTCTTCCAGTATCATCAGACACTACCAACCCCTTCCCCTCTCCAGAATGCTCTCTGTCCACAATTGGTCAGGTGGCAGGCTGTGCTGGGGTAACTGATGCTCAGATGTGTGGGCTGAGCAGGTCCTACCACTGACACAGGAGAGCACAACTGGGGCTGCTGGCGAAGAGGGCAATGACCACCACCTTCCTCTTGGATCCACGGGCCCACTCACCTGGCTTTCCTTGCCTCTCCCTTGGTCTCCCTCTCAGGCACTTCCCTGGGCTGCTTCTCTACCCAGTGCATACACTGTGTTCTGCAAGGCTGTGTCTTTCTGTCTCCCTCCTTCAACTCCACTGGATCATCTCATCTGGGAATTCAGTTTCAGTTTCCTCATCCTCTTAAAATCTCTAATTCCAGCCCCACACATGTGACAACCCCCTGGGCTTCCTTGGTTGTCCCACTAGCTGGTCCCAACCAAGGCCTGCCTCCCACAGCAGCTCCATGGCACAGCTGGCCTCTACCCTCTTGCTCCTTGCCTTGTCTGAGGGCCCGAGGTCCTTTGTGTGGGTGGTGTCTGTGGGCTGGAGCTGAGGGGAGTGAGGTCAGATGGTCCAGATGTGCAGCCCCAGATTCTCTCTGCTCCCCTAG
Seq C2 exon
GACATCCTGACCACTCACCCCTTCACCAAGATCTCCAACTGGAGCAGCGGCAACACCTACTTCCACATCACCATTGGGAACCTGGTGCGTGGGAGCAAACTCCTCTGTGAGACGTCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955:ENSBTAT00000005191:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACAGAGCCAAACTTTCCTGA
R:
GTGACGTCTCACAGAGGAGTT
Band lengths:
199-1084
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development