GgaINT0104551 @ galGal4
Intron Retention
Gene
ENSGALG00000000733 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr1:192357452-192358140:-
Coord C1 exon
chr1:192358057-192358140
Coord A exon
chr1:192357572-192358056
Coord C2 exon
chr1:192357452-192357571
Length
485 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CAGCTTTGTGTTCCCACCAGGAT
3' ss Score
8.34
Exon sequences
Seq C1 exon
CAAACTACAGAGCCAAATTATCCAGAAATCCTCCTAATTGCCATCAATAAACATGGAGTCAGCCTCATCGATCCTAAAACCAAG
Seq A exon
GTAAGACTGAGGTCTTCACCAGATGCCCTTGAGCCAGCAGCCCAAAGGCTGTGTTATTTAGAGATAAATTAATCTCATTAAGCCTAGTTCTCATTAAGCCTAGTTTGAACAACTGAATAGCCATAAAAGATCCTGGAGAAGAAGAATTGAGAGCAGCAACTCTTTGAGCCCTGTAAATGGAGAATATATGTACTCCTTCCCTAATCTTTTCACAGGCATTAGGACTGGAGCTGGAGTACATGAGCTCCTACTAGGTACTTCCACCAGCCACATGGTTTTTCCAGAACAGCCATCCTTCACAAGCACTGGAGGATCCAGTCTCTTGCATTTCACTGCTGTTCCTATGAGGCCATGGTACAGTCTCATTTCAACAGACATCCTTAGTCTGCTTTAAAGGAAAGAGAACAGGGACATGGAAGGTCCACATGCCCTTCATAAAAGTTGAGGCTCTTGTGTGTTGACTGTCAGCTTTGTGTTCCCACCAG
Seq C2 exon
GATATTCTCATCACTCATCCCTTCACCAAGATCTCCAACTGGAGCAGTGGCAACACGTACTTCCATATAACGATCGGCAATCTGGTGAGGGGAAGCAAGCTGCTCTGCGAGACATCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733:ENSGALT00000001046:47
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACTACAGAGCCAAATTATCCAGA
R:
TTGCTTCCCCTCACCAGATTG
Band lengths:
182-667
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]