GgaINT0104551 @ galGal3
Intron Retention
Gene
ENSGALG00000000733 | MYO7A
Description
NA
Coordinates
chr1:198105945-198106633:-
Coord C1 exon
chr1:198106550-198106633
Coord A exon
chr1:198106065-198106549
Coord C2 exon
chr1:198105945-198106064
Length
485 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CAGCTTTGTGTTCCCACCAGGAT
3' ss Score
8.34
Exon sequences
Seq C1 exon
CAAACTACAGAGCCAAATTATCCAGAAATCCTCCTAATTGCCATCAATAAACATGGAGTCAGCCTCATCGATCCTAAAACCAAG
Seq A exon
GTAAGACTGAGGTCTTCACCAGATGCCCTTGAGCCAGCAGCCCAAAGGCTGTGTTATTTAGAGATAAATTAATCTCATTAAGCCTAGTTCTCATTAAGCCTAGTTTGAACAACTGAATAGCCATAAAAGATCCTGGAGAAGAAGAATTGAGAGCAGCAACTCTTTGAGCCCTGTAAATGGAGAATATATGTACTCCTTCCCTAATCTTTTCACAGGCATTAGGACTGGAGCTGGAGTACATGAGCTCCTACTAGGTACTTCCACCAGCCACATGGTTTTTCCAGAACAGCCATCCTTCACAAGCACTGGAGGATCCAGTCTCTTGCATTTCACTGCTGTTCCTATGAGGCCATGGTACAGTCTCATTTCAACAGACATCCTTAGTCTGCTTTAAAGGAAAGAGAACAGGGACATGGAAGGTCCACATGCCCTTCATAAAAGTTGAGGCTCTTGTGTGTTGACTGTCAGCTTTGTGTTCCCACCAG
Seq C2 exon
GATATTCTCATCACTCATCCCTTCACCAAGATCTCCAACTGGAGCAGTGGCAACACGTACTTCCATATAACGATCGGCAATCTGGTGAGGGGAAGCAAGCTGCTCTGCGAGACATCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733:ENSGALT00000001046:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064018=PID=FE(40.9=100)
A:
NA
C2:
PF0064018=PID=PD(50.0=82.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACTACAGAGCCAAATTATCCAGA
R:
TTGCTTCCCCTCACCAGATTG
Band lengths:
182-667
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]